Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20190 69 / 2e-13 unknown protein AT1G30850 66 / 2e-12 RSH4 root hair specific 4 (.1) AT2G34910 66 / 3e-12 unknown protein AT5G44660 57 / 3e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036246 [exp] 372 / 1e-130 AT4G20190 125 / 3e-33 unknown protein Lus10008075 [exp] 169 / 7e-49 AT5G44650 209 / 2e-63 Ycf3-interacting protein 1, Arabidopsis thaliana chloroplast protein-enhancing stress tolerance, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G074300 [exp] 134 / 5e-37 AT4G20190 135 / 4e-36 unknown protein Potri.003G156700 [exp] 129 / 7e-35 AT4G20190 129 / 1e-33 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038386 pacid=23158124 polypeptide=Lus10038386 locus=Lus10038386.g ID=Lus10038386.BGIv1.0 annot-version=v1.0 ATGACCCATGGGGTTTATGAGTACGATCTGGAAAAACAGATGTCTGTGGATCCAATTTCGCTGATTTTGCCGCGGATTGTTACGAATCCAATGCTTCCAC CCCCATCGCCCAAACTGCTGAGTCTGCCTAACTCATCGCGGTTCGGTTTATGGATGAAGAAGAAATTCAGCCACGCCTCACCACGCCAAATCGACCACGG CAGCTCTCTTCGGAAATGCTCCAGGGTTCACCCTCATCATCATGATCATCTTCCGAACGAAACTCAGTTCAGGCGGAGTAAGTCCTGTGCGGAGGGGAGA TCCAGTGGAGTTGATGAACTCGATGTTTGGTTCAAGAATCCCGACGAATTCGTAGTCGAACCAAACGCCAAATCTTCTTCTTCGCCGATGGCAGGGACGA AGAAGATGAATAAGGAGGAAGAGGAATTCAAATGTGGAGCGCTCTGCTTGTACCTTCCGGGATTCGGCGACGGAAAGGTGAAGCCGGCGAGAGAGAGGAA GGAGGGAGTGATCATATCGAGGACGGTGTCTCTGGAGAAGTTTGAATGCGGTTCATGGGCGTCGTCGGAGATTATTAACGGAGAGGATCTGAAAGGGATG CTGAAGAAGAACGGCTCCACGACTCCGAATAGGAAGTCTTCGGGGGAGGAATGCTCCGCAAGGCAAGTGGGTTTTTGGAGGTCGTCATCGTCGGCGGCAT CGACCCCTTCATCGCCGGCGATGTGCATTACGCCGCGATTGCGCAAGGCCAGGGAAGAGTTCGACGCTTTCCTCCAAGCCGAAGCGCGGACCTCCTGA
AA sequence Show only first row Show all	>Lus10038386 pacid=23158124 polypeptide=Lus10038386 locus=Lus10038386.g ID=Lus10038386.BGIv1.0 annot-version=v1.0 MTHGVYEYDLEKQMSVDPISLILPRIVTNPMLPPPSPKLLSLPNSSRFGLWMKKKFSHASPRQIDHGSSLRKCSRVHPHHHDHLPNETQFRRSKSCAEGR SSGVDELDVWFKNPDEFVVEPNAKSSSSPMAGTKKMNKEEEEFKCGALCLYLPGFGDGKVKPARERKEGVIISRTVSLEKFECGSWASSEIINGEDLKGM LKKNGSTTPNRKSSGEECSARQVGFWRSSSSAASTPSSPAMCITPRLRKAREEFDAFLQAEARTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20190			unknown protein		Lus10038386 [exp]	0	1
AT5G23520			smr (Small MutS Related) domai...		Lus10019219 [exp]	3.2	0.7883
AT3G46100		ATHRS1	Histidyl-tRNA synthetase 1 (.1...		Lus10023925 [exp]	5.5	0.7532
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10042764 [exp]	9.1	0.7832
AT2G17020			F-box/RNI-like superfamily pro...		Lus10023988 [exp]	12.6	0.7766
AT5G22730			F-box/RNI-like/FBD-like domain...		Lus10027471 [exp]	13.4	0.7540
AT4G27340			Met-10+ like family protein (....		Lus10037871 [exp]	17.1	0.7411
AT2G45620			Nucleotidyltransferase family ...		Lus10009309 [exp]	22.6	0.7134
AT2G02148			unknown protein		Lus10031926 [exp]	24.2	0.6768
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10029733 [exp]	28.4	0.7035
AT2G45620			Nucleotidyltransferase family ...		Lus10009310 [exp]	29.1	0.7376

Compare expression of checked genes

Lus10038386 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.