Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20170 607 / 0 Domain of unknown function (DUF23) (.1) AT5G44670 596 / 0 Domain of unknown function (DUF23) (.1) AT2G33570 443 / 7e-152 Domain of unknown function (DUF23) (.1) AT5G48190 140 / 3e-40 Domain of unknown function (DUF23) (.1) AT3G60990 140 / 3e-40 Domain of unknown function (DUF23) (.1) AT3G07380 138 / 3e-39 Domain of unknown function (DUF23) (.1) AT3G27330 45 / 9e-05 zinc finger (C3HC4-type RING finger) family protein (.1) AT4G37420 43 / 0.0006 Domain of unknown function (DUF23) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036247 [exp] 876 / 0 AT5G44670 649 / 0.0 Domain of unknown function (DUF23) (.1) Lus10008076 [exp] 807 / 0 AT5G44670 642 / 0.0 Domain of unknown function (DUF23) (.1) Lus10024731 [exp] 619 / 0 AT5G44670 491 / 1e-170 Domain of unknown function (DUF23) (.1) Lus10010731 [exp] 45 / 0.0002 AT1G27200 555 / 0.0 Domain of unknown function (DUF23) (.1) Lus10036676 [exp] 42 / 0.0009 AT1G27200 543 / 0.0 Domain of unknown function (DUF23) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G156600 [exp] 734 / 0 AT5G44670 598 / 0.0 Domain of unknown function (DUF23) (.1) Potri.001G074600 [exp] 725 / 0 AT5G44670 613 / 0.0 Domain of unknown function (DUF23) (.1) Potri.005G258900 [exp] 427 / 1e-145 AT2G33570 706 / 0.0 Domain of unknown function (DUF23) (.1) Potri.010G039000 [exp] 45 / 8e-05 AT1G27200 582 / 0.0 Domain of unknown function (DUF23) (.1) Potri.005G252100 [exp] 44 / 0.0002 AT4G37420 540 / 0.0 Domain of unknown function (DUF23) (.1) Potri.008G192000 [exp] 42 / 0.0008 AT1G27200 585 / 0.0 Domain of unknown function (DUF23) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01697 [flax] [poplar] Glyco_transf_92 Glycosyltransferase family 92
Representative CDS sequence Show only first row Show all	>Lus10038387 pacid=23158408 polypeptide=Lus10038387 locus=Lus10038387.g ID=Lus10038387.BGIv1.0 annot-version=v1.0 ATGGGCGTAGTTATGAACTGCGCCACCGAGCTCAAACTCCTCCTCACCGCTCTCCTTATCCTCTGCTCCGTCGCTACTTTCCTCCAGTTCATCCCTTCCC GCTTCGCAATCTCTACCTCCGACCTCCGCTTCTGCATCTCCCGTATCACCACCACCACCACTACCACAACCACCACCGCCGAACATTCTCTCAATTCCTC CTCCGCCGCCGCTTCCGTCGCCGCTCTTACCGCGTCACGCCTTGTCCTCCCACCGGCGCCGCCTCTTCCTTCTCCTCCTCCTTCCTCCGGCACCGCCGCC GTCGAGAAGGAGACGGTGCAGGAGAACGGCGTAATCAAGCGAGTGTTCAACCCGTACGGCTCCGCCGCGTACAATTTCATCACCATGGGGACCTACAGAG GCGGAATCAACACGTTCGCCATCAACGGCCTCGCCTCCAAACCCCTCCACCTCTACTCCAAGCCCACTTACCAATGCGAGTGGGTCCCACATTCCGATTC CGATCCAAATTCAAATTCTTCCGTGAAAACCACCGTTGGTTACAAGATGCTTCCTGATTGGGGCTACGGCAGGGTATACACGGTCGTAATTGTCAACTGC ACTTTCTCCGAGCCGATCAACGCCGACAATTCCGGAGGCAAGCTATACCTCCTCGCCTCCACATCGGGCGGCGGTGACGCCCAATTGAACATCACCGACC GATTCGAAGTCCTCGACGAGCCAAAATCCACCGTCGATCTCCAGATCTACAATTCCAAGCCGAAATACGACTATCTCTACTGCGGCTCGTCTCTGTACGG GCAGCTGAGCCCGCAGAGAGTAAGAGAGTGGATCACCTACCATGTCCGGATGTTCGGAGAGAAGTCGCATTTCGTGATTCACGACGCCGGCGGGGTCTAC GACGAGGTGTTCGAGGTTCTGAAGCCGTGGATGGAGCTAGGGTATGTGACGCTGCAGGACATTAGGGACCAGGAGAGGTTCGATGGGTACTACCACAACC AGTTCATGGTGGTGAACGATTGCCTTCACCGGTATAAATTTCAGGCCAAGTGGATGTTCTTCTTCGACGTGGATGAGTTTCTCTACGTGCCGCCCAAGAG TACCATCAAATCGGTGATGGATTCGTTTTCGGACTATACTCAGATCACGATGGAGCAGATGCCGATGAACAGCAAGCTCTGCCTCTCCGCCGATTATGGC AGATACTACAGGAAATGGGGGTTTGAGAAGATGGTGTACAAGGACGCGAAGAGAGGAGTAAGAAGGGACAGAAAGTACGCAATCCAGCCCAGAAATGTGT ACGCCACGGGAGTCCACATGTCGCAGAACTTCGCCGGAAAGACCAACCACAAGACGGAAGGGAGGATCAGGTACTACCATTACCACGGCTCGATTGCTCA ACGGCGGGAGCCTTGCCGGAACTTGCTCAACGCCACCGACACGTGGTTCGAGAAGACCCCCTATGTGCTGGACACAACCATGAGGGACATCGGCTGGGCG GTGAAGAAATTCGAGCTCAGGATGATCGGCAACAGGCTGCAAAATACCCGCCAATAA
AA sequence Show only first row Show all	>Lus10038387 pacid=23158408 polypeptide=Lus10038387 locus=Lus10038387.g ID=Lus10038387.BGIv1.0 annot-version=v1.0 MGVVMNCATELKLLLTALLILCSVATFLQFIPSRFAISTSDLRFCISRITTTTTTTTTTAEHSLNSSSAAASVAALTASRLVLPPAPPLPSPPPSSGTAA VEKETVQENGVIKRVFNPYGSAAYNFITMGTYRGGINTFAINGLASKPLHLYSKPTYQCEWVPHSDSDPNSNSSVKTTVGYKMLPDWGYGRVYTVVIVNC TFSEPINADNSGGKLYLLASTSGGGDAQLNITDRFEVLDEPKSTVDLQIYNSKPKYDYLYCGSSLYGQLSPQRVREWITYHVRMFGEKSHFVIHDAGGVY DEVFEVLKPWMELGYVTLQDIRDQERFDGYYHNQFMVVNDCLHRYKFQAKWMFFFDVDEFLYVPPKSTIKSVMDSFSDYTQITMEQMPMNSKLCLSADYG RYYRKWGFEKMVYKDAKRGVRRDRKYAIQPRNVYATGVHMSQNFAGKTNHKTEGRIRYYHYHGSIAQRREPCRNLLNATDTWFEKTPYVLDTTMRDIGWA VKKFELRMIGNRLQNTRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44670			Domain of unknown function (DU...		Lus10038387 [exp]	0	1
AT5G44670			Domain of unknown function (DU...		Lus10036247 [exp]	1.0	0.9764
AT3G27470			Protein of unknown function (D...		Lus10032090 [exp]	1.4	0.9742
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10037377 [exp]	1.7	0.9582
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10036709 [exp]	2.0	0.9468
AT1G17890		GER2	NAD(P)-binding Rossmann-fold s...		Lus10036882 [exp]	3.3	0.9219
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Lus10002979 [exp]	4.2	0.9393
AT5G24600			Protein of unknown function, D...		Lus10032916 [exp]	4.6	0.9287
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036112 [exp]	5.0	0.9466
AT3G27330			zinc finger (C3HC4-type RING f...		Lus10032118 [exp]	5.3	0.9156
AT2G47600		ATMHX1, ATMHX	MAGNESIUM/PROTON EXCHANGER 1, ...		Lus10007879 [exp]	5.5	0.9233

Compare expression of checked genes

Lus10038387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.