Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44680 209 / 1e-65 DNA glycosylase superfamily protein (.1) AT5G57970 145 / 6e-41 DNA glycosylase superfamily protein (.1.2) AT1G80850 134 / 3e-37 DNA glycosylase superfamily protein (.1) AT3G12710 131 / 3e-36 DNA glycosylase superfamily protein (.1) AT1G15970 122 / 2e-32 DNA glycosylase superfamily protein (.1) AT1G13635 116 / 1e-30 DNA glycosylase superfamily protein (.1.2) AT1G75090 114 / 2e-29 DNA glycosylase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036248 [exp] 405 / 8e-143 AT5G44680 383 / 4e-133 DNA glycosylase superfamily protein (.1) Lus10026083 [exp] 123 / 7e-33 AT5G57970 308 / 6e-104 DNA glycosylase superfamily protein (.1.2) Lus10002310 [exp] 120 / 1e-31 AT1G80850 299 / 3e-100 DNA glycosylase superfamily protein (.1) Lus10036835 [exp] 100 / 1e-24 AT1G13635 216 / 2e-69 DNA glycosylase superfamily protein (.1.2) Lus10019198 [exp] 96 / 1e-23 AT1G13635 300 / 4e-103 DNA glycosylase superfamily protein (.1.2) Lus10019199 [exp] 87 / 8e-20 AT1G13635 222 / 2e-71 DNA glycosylase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G156500 [exp] 241 / 2e-77 AT5G44680 370 / 8e-127 DNA glycosylase superfamily protein (.1) Potri.001G074700 [exp] 236 / 2e-75 AT5G44680 395 / 7e-137 DNA glycosylase superfamily protein (.1) Potri.010G175300 [exp] 211 / 4e-66 AT3G12710 372 / 1e-128 DNA glycosylase superfamily protein (.1) Potri.008G081000 [exp] 207 / 2e-64 AT5G44680 390 / 6e-135 DNA glycosylase superfamily protein (.1) Potri.003G182300 [exp] 118 / 7e-31 AT5G57970 286 / 1e-94 DNA glycosylase superfamily protein (.1.2) Potri.018G106900 [exp] 115 / 8e-30 AT5G57970 418 / 2e-146 DNA glycosylase superfamily protein (.1.2) Potri.006G184700 [exp] 113 / 6e-29 AT5G57970 473 / 8e-168 DNA glycosylase superfamily protein (.1.2) Potri.010G137300 [exp] 109 / 7e-28 AT1G13635 380 / 7e-133 DNA glycosylase superfamily protein (.1.2) Potri.014G041700 [exp] 107 / 7e-27 AT1G75090 332 / 2e-113 DNA glycosylase superfamily protein (.1) Potri.002G133800 [exp] 106 / 1e-26 AT1G75090 333 / 7e-114 DNA glycosylase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03352 [flax] [poplar] Adenine_glyco Methyladenine glycosylase
Representative CDS sequence Show only first row Show all	>Lus10038388 pacid=23158349 polypeptide=Lus10038388 locus=Lus10038388.g ID=Lus10038388.BGIv1.0 annot-version=v1.0 ATGTGTTCATCAAAGCTGAAGCAACAGACTGTTGCTAACATCTCCACAACCACAACATCACCACAAGCTATGATTTCCAACAACATCAATGGCCGTCCAG TCCTTCAACCCAAATCCAACCAAGTCCCTACTAATTTCACTTTAGAGAGGAAGAACTCACTCAAAAAATCATCTCCCCCAACCCCAAAATCACCCACCAA CACAAAGTCCAAACCTCTGTCTCCCCTTCCCACCCGAACCTTACGCAAGGCCGCTTCATTCACCCTCGAAAGGACCCTCACCTTCGAGTCTTCCCTAATC GTCGAGGCCCCCGGTACAATCGCTGCTGCGAGGAGGGAACACGTGGCCATTATGCAGGAGCAGAGGAAGATGAGGACTGCACATTATGGCAGGACCAAAT CCTGCAAGATTCGTTCCTCTTCTTCCCCAACTCATAATGTTGGGGAAGAAGAGGCGGGTTTCGAGCAGCCGAAGAGATGCAACTTCATCACACCGAATTC TGATCCGATCTATGTTGCTTACCATGATGAGGAATGGGGGGTTCCTGTTCATGACGACAATTTGCTGCTGGAATTGCTGGTGTTGACTGGTGCACAAGTG AAGAGGGAGTTTGGGTCATTTGACAAATACCTATGGAAGTTTGTGAACAACAAGGCAATGGCAAGCCAGTACAGAGCAAGCCACAAGATGCCAGTGAAGA GCTCAAAAGCAGAGAGCATAAGCAAAGACATGGTGAAGAGAGGGTTCAGGCTGGTTGGTCCAACTGTAATCCACTCATTCATGCAAGCAGCTGGACTCAT CAATGACCACTTACTCACTTGCCCAAGGCACCTCCACTGCCAACTCTTGCTCTGA
AA sequence Show only first row Show all	>Lus10038388 pacid=23158349 polypeptide=Lus10038388 locus=Lus10038388.g ID=Lus10038388.BGIv1.0 annot-version=v1.0 MCSSKLKQQTVANISTTTTSPQAMISNNINGRPVLQPKSNQVPTNFTLERKNSLKKSSPPTPKSPTNTKSKPLSPLPTRTLRKAASFTLERTLTFESSLI VEAPGTIAAARREHVAIMQEQRKMRTAHYGRTKSCKIRSSSSPTHNVGEEEAGFEQPKRCNFITPNSDPIYVAYHDEEWGVPVHDDNLLLELLVLTGAQV KREFGSFDKYLWKFVNNKAMASQYRASHKMPVKSSKAESISKDMVKRGFRLVGPTVIHSFMQAAGLINDHLLTCPRHLHCQLLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57970			DNA glycosylase superfamily pr...		Lus10038388 [exp]	0	1
AT5G44680			DNA glycosylase superfamily pr...		Lus10036248 [exp]	1.0	0.9803
AT1G23965			unknown protein		Lus10030844 [exp]	1.4	0.9460
AT2G42380	bZIP	ATBZIP34	Basic-leucine zipper (bZIP) tr...		Lus10033630 [exp]	2.4	0.8908
AT2G20760			Clathrin light chain protein (...		Lus10039815 [exp]	3.0	0.9163
AT1G10740			alpha/beta-Hydrolases superfam...		Lus10030586 [exp]	5.0	0.8438
AT1G23965			unknown protein		Lus10030641 [exp]	5.9	0.8891
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10039038 [exp]	6.0	0.8840
AT5G18050			SAUR-like auxin-responsive pro...		Lus10008994 [exp]	6.7	0.8923
AT5G54250		HLM1, DND2, ATC...	DEFENSE, NO DEATH 2, cyclic nu...		Lus10010061 [exp]	6.9	0.8869
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10024834 [exp]	9.4	0.8748

Compare expression of checked genes

Lus10038388 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.