Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34920 91 / 7e-19 EDA18 embryo sac development arrest 18, RING/U-box superfamily protein (.1) AT4G20160 84 / 7e-17 unknown protein AT1G30860 80 / 1e-15 RING/U-box superfamily protein (.1) AT5G44690 77 / 9e-15 unknown protein AT2G27950 53 / 5e-07 Ring/U-Box superfamily protein (.1) AT5G04460 50 / 4e-06 RING/U-box superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036249 [exp] 801 / 0 AT4G20160 182 / 3e-48 unknown protein Lus10017455 [exp] 63 / 3e-10 AT5G04460 858 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10028827 [exp] 63 / 3e-10 AT5G04460 879 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10038656 [exp] 62 / 9e-10 AT5G04460 930 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10037928 [exp] 61 / 1e-09 AT5G04460 912 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10021403 [exp] 53 / 5e-07 AT2G27950 470 / 5e-154 Ring/U-Box superfamily protein (.1) Lus10016162 [exp] 52 / 7e-07 AT2G27950 278 / 6e-85 Ring/U-Box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G156400 [exp] 153 / 1e-39 AT2G34920 172 / 5e-45 embryo sac development arrest 18, RING/U-box superfamily protein (.1) Potri.001G074800 [exp] 147 / 2e-37 AT1G30860 179 / 1e-46 RING/U-box superfamily protein (.1) Potri.010G231100 [exp] 63 / 4e-10 AT5G04460 768 / 0.0 RING/U-box superfamily protein (.1.2.3) Potri.008G030100 [exp] 62 / 8e-10 AT5G04460 805 / 0.0 RING/U-box superfamily protein (.1.2.3) Potri.009G003500 [exp] 55 / 1e-07 AT2G27950 578 / 0.0 Ring/U-Box superfamily protein (.1) Potri.004G217700 [exp] 54 / 3e-07 AT2G27950 533 / 2e-177 Ring/U-Box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038389 pacid=23158362 polypeptide=Lus10038389 locus=Lus10038389.g ID=Lus10038389.BGIv1.0 annot-version=v1.0 ATGGTTGTGAGCTCTCCAAGGATTCGCGGCCGGCAAGCTTTCCATGATTTGCTTGGCCACATTGAGCAGGACCGCCATAAAGAGCTTGGCTACCTTGCTG AGCGTCACGCCGTCTCCAAATTTTCCTACCGTGGCCGCATTCAGTCTCTGCTCAAGCTAAGGTTCTTGAGGCGAGACATGGGAGGTCAAAGTCGACCGGT GCCACCGCCACCAGCCTGTAGACCTCCGCAGCATAGTTCAAGCATTATGCAGCTTAGGGAGAGATTAAGGGCGTCCCTTCAGCCAGCTAAAAGTAGCGAG AGGGAAGCAGTAGTTGCTGCACCAACAAGGGTAGACAATCACAGTAGAAAAGTAGACAACACTTGCTCCACTCAGACTCAGATGACAAGTGAGAGTCAGC CGAACGAAAAGGTTTCTCCAATGGAAGAACAATGTCCGGTTGTGGTGGCAGCAAATATTGAACAGCAACCGCAGAAGGTGAGGCAAGAGTCGAGACAAGA ACAGGTATTGGATAAGAAAGAGACAGGTGAAAGAGTTGAGGATGTAGTGGTGAATCATCATGTAGAGGAGCAATCAAACTACCCTGAACCCGAGAAGGCA GAAACCAGCCTATTTCAGGATTCGGTGGAAGCATGGCAAGAACGGTTTTTGGACTGTGCAATCGGGGAAGAAGCCGAGCCAGAAGAAGAAGGAGATGGAG AGGGAGATGAAGAATTTGATGAAGAAGAAGAAGAAGAAGAACAGCAGGATTACGTTGAGGAAGCCCCATATGATTGGTTTAGTGACATAGCAAGGCCACG AAGCTATTGGGAAGACATGAGGCGTTCTTGGTATGACGAGATGCTGAACAATGGCAATGGAAACAGAGACATTAAGGAACTTCTGGAGAGGAAAACAGTG TCGAGTTTTCTAGCTAGTGACTTTAGAGACAGGATTGATAGGCTGATGATATCCAGAACCCGTATCCAAGCTACACAAGAACTGCCAGAATCAGACGTTG AGGAAAATCAGGAAAGAATGGCGCAGTTAGCATTGTCATACTTCCGCAGGGAGAATAATGACGGGTCACAGGAACAACACCCTATGGTAGACGACGACAG GGGAGAAATAGAGGAAACTGATGAAGGGACAGAGGGGGAAGAATCTCCATCATCATCAGAAGAAGAGGAGGATGAAGAGGGGGAGTCAGAAGAGTACATG GAACAGGATGAGCATCGTGAAGAAAGCTTAACAAGCCGGCAATTTGTCGAAGCAAACGATCTTTTTGATCGGTCATCTCATCAATCATCAGTCTTCACTG CCTCTCCATTCAGGCCATGGCAATCGGTGGAGGACTACGAGCGATTCTCGAATGCAAACTCTCAACAACATCATCAGTCATTCCGGGGTAGTAATAATCA GGAGAGAAAATGCTCGTGTTGTCCAACTCATGCATCCATTGACGTGGATGTAGTGAATGAATTGAGAGGGAACGTAGCAGAGCTGAGGAGTGAAGTAGCG GACCTGAAGAAGCTAGTGCAGAGCTGCATGGAAATGCAGATGAGGTTTGCCAAGCTGCTTCCTGGTGAAGTAGGACCATGGACAAGTTTCCAATGA
AA sequence Show only first row Show all	>Lus10038389 pacid=23158362 polypeptide=Lus10038389 locus=Lus10038389.g ID=Lus10038389.BGIv1.0 annot-version=v1.0 MVVSSPRIRGRQAFHDLLGHIEQDRHKELGYLAERHAVSKFSYRGRIQSLLKLRFLRRDMGGQSRPVPPPPACRPPQHSSSIMQLRERLRASLQPAKSSE REAVVAAPTRVDNHSRKVDNTCSTQTQMTSESQPNEKVSPMEEQCPVVVAANIEQQPQKVRQESRQEQVLDKKETGERVEDVVVNHHVEEQSNYPEPEKA ETSLFQDSVEAWQERFLDCAIGEEAEPEEEGDGEGDEEFDEEEEEEEQQDYVEEAPYDWFSDIARPRSYWEDMRRSWYDEMLNNGNGNRDIKELLERKTV SSFLASDFRDRIDRLMISRTRIQATQELPESDVEENQERMAQLALSYFRRENNDGSQEQHPMVDDDRGEIEETDEGTEGEESPSSSEEEEDEEGESEEYM EQDEHREESLTSRQFVEANDLFDRSSHQSSVFTASPFRPWQSVEDYERFSNANSQQHHQSFRGSNNQERKCSCCPTHASIDVDVVNELRGNVAELRSEVA DLKKLVQSCMEMQMRFAKLLPGEVGPWTSFQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20160			unknown protein		Lus10038389 [exp]	0	1
AT2G38720		MAP65-5	microtubule-associated protein...		Lus10041635 [exp]	5.8	0.9065
AT2G25270			unknown protein		Lus10001929 [exp]	11.7	0.8879
AT5G26850			Uncharacterized protein (.1.2....		Lus10020697 [exp]	13.9	0.8994
AT2G40630			Uncharacterised conserved prot...		Lus10030527 [exp]	18.1	0.8349
AT1G04030			unknown protein		Lus10008231 [exp]	22.9	0.8872
AT1G04030			unknown protein		Lus10003613 [exp]	23.6	0.8865
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10013443 [exp]	25.4	0.8634
AT5G15510			TPX2 (targeting protein for Xk...		Lus10030650 [exp]	26.3	0.8874
AT3G54750			unknown protein		Lus10029345 [exp]	27.7	0.8783
AT5G58090			O-Glycosyl hydrolases family 1...		Lus10040579 [exp]	30.4	0.8678

Compare expression of checked genes

Lus10038389 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.