Plant FIBer expression Database

Lus10038390 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G04460 40 / 0.0007 RING/U-box superfamily protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036249
[exp]
0 / 1 AT4G20160 182 / 3e-48 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G074800
[exp]
92 / 5e-21 AT1G30860 179 / 1e-46 RING/U-box superfamily protein (.1)
Potri.003G156400
[exp]
87 / 2e-19 AT2G34920 172 / 5e-45 embryo sac development arrest 18, RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10038390 pacid=23158159 polypeptide=Lus10038390 locus=Lus10038390.g ID=Lus10038390.BGIv1.0 annot-version=v1.0
ATGGCGTCATTTCAGGTTGAGATGGCTGCTGCATCTTCGTCTCCGTTCGGCTGCGTTCTTCGTGACCGGAATCGATGCAGCAACAGGGAGACAACCACCG
CCGCCACCGCCGCCGTACCCTCAACCGCTACCACCACCAGTTCATCAAAAGCCGCCGCCGCTGCTTTCCAGAAGAACCTCAAGGTTCTGGTGAGAGACCA
TCTCCACACCTGCATTTCTGTTTCTCCCGACGAGAACGAGAACGTCGCCGATAATAACAGCACTCACGCAGCCTCTTCTAAACCTGAATCAACAAGGAAT
AATAATAACAACAACAGCAACAATAACAACAACAATATGAGCAGCCGGATGAGCAGCCGTCAGGCGAGGAATTTGGACCGGTGGGCGGCGAAGCAGGCGG
AGCAGATGGTGTCGACAATCGAACGGCAGAGACAGGAGGCGGAGGAGCTATGGGTGGTGGCGTCTAGTAATCCGAGCAATTCTTCGAAAAAGGAATCGGA
GAACTGCGTAATCTCATCGCAAAGTTCGATAGCGGATAGCGAGTGTTCTTCTCTAATTGGAGCTTCGTCGCTGGTGCAGATGTGGGAGGCGAGGATGAAT
CCTCACGGATTGGGTGGAGTCCGCGGCTCAGAGCACAGTCTCGGCGTCTATCCCGAACCGGCATTCGGATGTGGGAGCGGATGGGGAGAAAGTTAG
AA sequence
>Lus10038390 pacid=23158159 polypeptide=Lus10038390 locus=Lus10038390.g ID=Lus10038390.BGIv1.0 annot-version=v1.0
MASFQVEMAAASSSPFGCVLRDRNRCSNRETTTAATAAVPSTATTTSSSKAAAAAFQKNLKVLVRDHLHTCISVSPDENENVADNNSTHAASSKPESTRN
NNNNNSNNNNNNMSSRMSSRQARNLDRWAAKQAEQMVSTIERQRQEAEELWVVASSNPSNSSKKESENCVISSQSSIADSECSSLIGASSLVQMWEARMN
PHGLGGVRGSEHSLGVYPEPAFGCGSGWGES

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G04460 RING/U-box superfamily protein... Lus10038390
[exp]
0 1
AT5G51660 CPSF160, ATCPSF... cleavage and polyadenylation s... Lus10031692
[exp]
4.0 0.9406
AT5G64420 DNA polymerase V family (.1) Lus10041274
[exp]
4.5 0.9389
AT5G53870 AtENODL1 early nodulin-like protein 1 (... Lus10018606
[exp]
6.8 0.8982
AT3G57060 binding (.1.2) Lus10039013
[exp]
8.8 0.9384
AT2G22400 S-adenosyl-L-methionine-depend... Lus10020217
[exp]
9.7 0.9367
AT3G19050 POK2 phragmoplast orienting kinesin... Lus10027934
[exp]
11.0 0.9381
AT5G51660 CPSF160, ATCPSF... cleavage and polyadenylation s... Lus10031111
[exp]
12.7 0.9365
AT2G40030 NRPE1, DMS5, AT... DEFECTIVE IN MERISTEM SILENCIN... Lus10016333
[exp]
17.0 0.9280
AT5G40820 ATATR, ATRAD3, ... ARABIDOPSIS THALIANA ATAXIA TE... Lus10025091
[exp]
17.5 0.9271
AT3G06530 ARM repeat superfamily protein... Lus10008676
[exp]
19.0 0.9326

Lus10038390 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.