Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20140 1155 / 0 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 1089 / 0 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT5G63930 526 / 2e-167 Leucine-rich repeat protein kinase family protein (.1) AT2G33170 509 / 7e-161 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G35710 486 / 3e-152 Protein kinase family protein with leucine-rich repeat domain (.1) AT5G65700 469 / 3e-147 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G07280 468 / 2e-144 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G46330 462 / 8e-143 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT3G49670 455 / 1e-141 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G28490 444 / 2e-137 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036251 [exp] 1789 / 0 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10027688 [exp] 484 / 1e-152 AT4G20140 707 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10008849 [exp] 482 / 4e-150 AT1G73080 648 / 0.0 PEP1 receptor 1 (.1) Lus10003612 [exp] 465 / 9e-144 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10019248 [exp] 456 / 1e-141 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10011761 [exp] 451 / 9e-141 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017782 [exp] 452 / 1e-139 AT1G34110 1467 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10008712 [exp] 448 / 1e-138 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10023323 [exp] 450 / 3e-138 AT5G46330 1055 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G156200 [exp] 1290 / 0 AT4G20140 1394 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G075000 [exp] 1227 / 0 AT4G20140 1371 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.012G022800 [exp] 508 / 5e-160 AT1G73080 582 / 0.0 PEP1 receptor 1 (.1) Potri.003G174900 [exp] 503 / 2e-158 AT2G33170 1348 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G053400 [exp] 501 / 5e-158 AT2G33170 1311 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.013G051300 [exp] 498 / 1e-156 AT5G63930 1281 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G088900 [exp] 493 / 2e-156 AT4G20140 700 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.008G009300 [exp] 495 / 2e-155 AT1G73080 1064 / 0.0 PEP1 receptor 1 (.1) Potri.019G025500 [exp] 494 / 2e-155 AT5G63930 1320 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G129100 [exp] 495 / 9e-155 AT1G35710 863 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10038392 pacid=23158468 polypeptide=Lus10038392 locus=Lus10038392.g ID=Lus10038392.BGIv1.0 annot-version=v1.0 ATGGAATTCCTTCACCTTCTCGCCGCCGTCATCCTCCTTCTTCTTTCGCTCTCCGGTTCCGTTACGTCTCGGAACCAAGAGCTTGAAGTTCTTCTCGAAG TGAAGGAATCACTCATCTCCGGCCAACCAAGCTTGCTCACCGACTGGAACCGAACCAGCAACCCGAAATTCTGCAAATGGACAGGGGTGACTTGCGGGCC GGGTCGGGTGGTAACGGGTCTGAACCTATCCGACTCGTCGCTATCCGGGTCGATCCCGCCGGAGATTGGCCGGTTACGGAACCTGCTCCACCTTGATCTC TCTTCCAACTCCCTAACGGGTCCCATCCCAACCACCCTGGTTAACCTTTCCGCATTGGAATCTTTGCTTTTGTATTCCAACCAACTCACCGGTCGGATCC CGGACCAGCTCGGTTCGCTCTCAAAACTCCGGGTCATCCGAATCGGAAACAACTACCTCACGGGTGAAATCCCTGAATCCTTGGGCAACCTACCCGAATT GGTCACTTTGGGTCTTGCTTCTTGCAGTTTGACCGGAGTTATCCCTCCTCGATTCGGCCGACTCGAGCGAGTCGAGGAGCTGATTCTGCAGGATAACCAG CTCGAAGGACCGATTCCTTCCGAGTTGGGTAACTGCTCCAGCCTAACCCACATCGTTCTAGGAGCAAACAACTTGAACGGAACGATTCCGAGTCAACTCG GTCAGTTGCGGAATCTCGAAAATCTCAACCTGGTAAATAACAGCTTCCTCAGCGGCAAGATACCGAGTCAACTCGGAAGCTTGACTCAGCTCATCTACCT CAACCTCGCTGGGAACCAGCTCCAAGGTCCGATTCCGAGGTCGCTAGCTCAATTGGATAACCTTAACAATCTGGATTTATCGTTCAACAAGCTGACCGGC GGGATTCCTGATGAATTTTTCTCCGGAATGGGTCAGCTTCTTTACCTAGCTTTGTCGAGTAACAACCTCACCGGCGTCCTTCCGAGAGGAATCTGCGCCA ATAAAACCAATCTCTTGAAGCTAATCCTATCGGAAACTCAACTTACCGGCGCCATTCCGGGGGAGCTGGTGAACTGCGGAGCACTCGAACAGCTCGACCT GTCGAATAACGCTCTCACCAGCGAAATTCCGGCAGAAATTTACGAGATGGTTCAGCTGACTCATCTCTATCTCCACAACAATACTCTGGATGGTTCTATC CTGCCGTCCATTGGGAATCTCACTAGCCTGAAGGAACTTGCAATCTACCACAACAATTTCCACGGCGGGATTCCGAAAGAGATCGGAATGCTTTCCAATC TCGAATTGCTATTTCTATATGACAATCAGTTTTCGGGAAATATCCCTGAAGAGATTGGAAACTGTTCGAGTCTGCAAATGGTTGATTTCTTCGGAAACCG TTTCACTGGCAGGATTCCTGGCACTATCGGAAGGCTGAAAGGACTGAGTTTTCTTCCAGAACGAGCTCGTCGGCGAAATTCCTGCCGAACTGGGAGGCTC ATGCTATACAACAACTCTCTCACAGGTACAGTTCCTGATGCCATCTCCAATTTGAGGAACCTGACGAGGATCAACTTTTCCTACAACAGACTGAACGGCA GCATTTCCCCCTTGTGCAGCTCGAGTTCCTTCCTATCGTTCGACGTCTCGAATAATGCCTTCTCAGGAGAGGTCCCTTCCGAATTGGGTAACTCGCCCAA TCTCGAAAGGCTGAGGCTTGGGAACAACAAGTTCACAGGAGGGATCCCTTGGACTTTGGGGAAGATCAGTGAGCTGTCATTCCTAGATATTTCAGGAAAC TTGCTTACAGGAGAGTTGCCTTTACCGCTCATGTTATGCAAGAATCTAACCGTTATCAATCTCGACAACAACCGGTTATCAGGTTCAATTCCTTCCTGGC TCGGATCATTGCCTCAGCTACGCGAGCTGGAGCTGTCCAGGAATCAGTTCACGGGTCCTCTGCCTCCTGAGCTTTTCAAGTGCTCAAACCTGATTCGTCT CTCCCTCGAAGACAATTTACTCAACGGAACGATCCCTTTGGAGATTGGTAACCTCGGGACTTCCTTCAACATTCTGACACTGAGCCACAATCAGTTCTCA GGACCGATTCCGGCCTCGATAAGTAACCTGACCAACATGAATCAGCTCATGTTGTCTCATAACAGATTCAGTGGAAGGATACCTGTGGAAATTGGAAAGC TGAAGTTTCTTATGGACATTCTAGACCTGAGCTACAATAACCTGACCGGCTCGATCCCGCCAGCCATTGGAACCTTACCGACACTCGAAGCTCTTAATCT TTCACACAATGAGCTCGAAGGATCACTGCCGCCCCAAATTGGAAACATGGTGAGTTTGGTCAGTCTGGATGTGTCCTACAATCATCTAGAAGGGAAATTA GGAGACCGGTTCGACCGCTGGTCGGCCGACTCTTTTCGAGCAAACCTGAAGCTATGCGGAGGCCCTCTTGATACACGTTGCCCTGAATCATCATCGCTGA GTAATAACCGTTCAAGGTTGAGTGCAGCTGCTGTTATATCGCTATCCGCCATAACAACATTGGCTGCACTGGCTCTACTGGGAATCGGACTTACATTGTT CTGCCGTAGAAGGAATGAGTATCTGAGAAGTAAGAATGAAGTAAGCTGCATTTACTCTTCGAGTTCTTCACGGCCTTTCTTTGGGAATGCCGGTATGAAG AAGGAGATCAGGTGGGATGATATTATGGAAGTTACGAATCATCTCAGCGAGGAATTCATTATCGGGTCAGGAGGATCAGGAACCATCTACAGAGCCGAGT TACGAAATTCGGAGATTGTCGCGGTCAAGAAGGTTCCGTGGAGAGATGAGCTAATGTTCAATAAGAGCTTCGCAAGGGAAGTGCAGACTCTCGGCAGGAT TCGACATAGGCATCTGGTGAAGCTGGTTGGTTACTGCTGCAATAGAGGAGCTGGGTGTAATCTGTTGGTTTATGAGTATATGGAGAATGGTAGCTTGTGG GACTGGCTACATAAGCAGCCACGTAAACTGAGTCTGGATTGGGAAGTGAGGCTAAGGATTGCTGCCGGGTTAGCAAAGGGTGTGGAGTATCTTCACCACG ATTGCGTCCCAAGCATCATCCATCGAGATATCAAATCGAGCAATCTTCTCCTGGACACGGATATGGAATCGCATCTTGGCGATTTCGGACTGGCCAAGAC GGCAGTTGAGTTTTACGAAAGCTCCACCGGTACAAGTACCGAATCGAACTCGTTTGCTGGGTCTTACGGATACATTGCGCCGGAATATGCTTACTCGTTG AAGGCGACCGAGAAGAGCGATGTGTTCAGCATGGGAATAGTGATGATGGAGATTGTGACAGGGAAAGCTCCAACGGATTCGGCGTTTGGATATGATATGG ACATGGTGAGGTGGGTGGAGAAACAGATGCAAAAGGGAGGATCTGGACGAGAAGAGTTGATCGATCCTTCGTTGATGCCGATGCTGCCTGAAGAAGAAAG TGCGGCGTATCGTGTTCTTGAGATTGCATTGCAGTGCACAACTACTGCTCCGCAAGGACGGCCATCGTCCAGGCAAACTTCCGACCAACTGATGCGTTTG TTGAAGAATCGGAAGGTGGATTCCCAGAAGAGTGCCGTGGATCCTTAA
AA sequence Show only first row Show all	>Lus10038392 pacid=23158468 polypeptide=Lus10038392 locus=Lus10038392.g ID=Lus10038392.BGIv1.0 annot-version=v1.0 MEFLHLLAAVILLLLSLSGSVTSRNQELEVLLEVKESLISGQPSLLTDWNRTSNPKFCKWTGVTCGPGRVVTGLNLSDSSLSGSIPPEIGRLRNLLHLDL SSNSLTGPIPTTLVNLSALESLLLYSNQLTGRIPDQLGSLSKLRVIRIGNNYLTGEIPESLGNLPELVTLGLASCSLTGVIPPRFGRLERVEELILQDNQ LEGPIPSELGNCSSLTHIVLGANNLNGTIPSQLGQLRNLENLNLVNNSFLSGKIPSQLGSLTQLIYLNLAGNQLQGPIPRSLAQLDNLNNLDLSFNKLTG GIPDEFFSGMGQLLYLALSSNNLTGVLPRGICANKTNLLKLILSETQLTGAIPGELVNCGALEQLDLSNNALTSEIPAEIYEMVQLTHLYLHNNTLDGSI LPSIGNLTSLKELAIYHNNFHGGIPKEIGMLSNLELLFLYDNQFSGNIPEEIGNCSSLQMVDFFGNRFTGRIPGTIGRLKGLSFLPERARRRNSCRTGRL MLYNNSLTGTVPDAISNLRNLTRINFSYNRLNGSISPLCSSSSFLSFDVSNNAFSGEVPSELGNSPNLERLRLGNNKFTGGIPWTLGKISELSFLDISGN LLTGELPLPLMLCKNLTVINLDNNRLSGSIPSWLGSLPQLRELELSRNQFTGPLPPELFKCSNLIRLSLEDNLLNGTIPLEIGNLGTSFNILTLSHNQFS GPIPASISNLTNMNQLMLSHNRFSGRIPVEIGKLKFLMDILDLSYNNLTGSIPPAIGTLPTLEALNLSHNELEGSLPPQIGNMVSLVSLDVSYNHLEGKL GDRFDRWSADSFRANLKLCGGPLDTRCPESSSLSNNRSRLSAAAVISLSAITTLAALALLGIGLTLFCRRRNEYLRSKNEVSCIYSSSSSRPFFGNAGMK KEIRWDDIMEVTNHLSEEFIIGSGGSGTIYRAELRNSEIVAVKKVPWRDELMFNKSFAREVQTLGRIRHRHLVKLVGYCCNRGAGCNLLVYEYMENGSLW DWLHKQPRKLSLDWEVRLRIAAGLAKGVEYLHHDCVPSIIHRDIKSSNLLLDTDMESHLGDFGLAKTAVEFYESSTGTSTESNSFAGSYGYIAPEYAYSL KATEKSDVFSMGIVMMEIVTGKAPTDSAFGYDMDMVRWVEKQMQKGGSGREELIDPSLMPMLPEEESAAYRVLEIALQCTTTAPQGRPSSRQTSDQLMRL LKNRKVDSQKSAVDP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10038392 [exp]	0	1
AT1G11655			unknown protein		Lus10001141 [exp]	4.2	0.8951
AT2G21100			Disease resistance-responsive ...		Lus10034479 [exp]	5.1	0.9083
AT2G30210		LAC3	laccase 3 (.1)		Lus10042249 [exp]	10.4	0.8950
AT3G08680			Leucine-rich repeat protein ki...		Lus10021383 [exp]	11.7	0.8871
AT2G27370		CASP3	Casparian strip membrane domai...		Lus10017008 [exp]	12.0	0.8877
AT5G05390		LAC12	laccase 12 (.1)		Lus10042252 [exp]	12.8	0.8935
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10034020 [exp]	13.5	0.8869
AT4G23740			Leucine-rich repeat protein ki...		Lus10038828 [exp]	14.1	0.8746
AT3G55230			Disease resistance-responsive ...		Lus10003301 [exp]	25.3	0.8863
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10000318 [exp]	25.3	0.8733

Compare expression of checked genes

Lus10038392 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.