Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30870 337 / 7e-115 Peroxidase superfamily protein (.1) AT3G03670 237 / 4e-76 Peroxidase superfamily protein (.1) AT5G17820 236 / 1e-75 Peroxidase superfamily protein (.1) AT5G66390 231 / 1e-73 Peroxidase superfamily protein (.1) AT3G21770 229 / 7e-73 Peroxidase superfamily protein (.1) AT3G01190 228 / 1e-72 Peroxidase superfamily protein (.1) AT2G18140 228 / 1e-72 Peroxidase superfamily protein (.1) AT1G05260 228 / 1e-72 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT5G64120 228 / 1e-72 Peroxidase superfamily protein (.1) AT2G18150 226 / 2e-71 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001228 [exp] 605 / 0 AT1G30870 357 / 8e-123 Peroxidase superfamily protein (.1) Lus10012684 [exp] 230 / 3e-73 AT2G41480 395 / 2e-138 Peroxidase superfamily protein (.1) Lus10015127 [exp] 229 / 5e-73 AT1G05260 444 / 7e-158 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10031548 [exp] 228 / 2e-72 AT1G05260 441 / 1e-156 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10041784 [exp] 228 / 2e-72 AT5G66390 519 / 0.0 Peroxidase superfamily protein (.1) Lus10027163 [exp] 226 / 8e-72 AT4G11290 491 / 4e-176 Peroxidase superfamily protein (.1) Lus10039681 [exp] 225 / 2e-71 AT4G11290 488 / 3e-175 Peroxidase superfamily protein (.1) Lus10031664 [exp] 224 / 6e-71 AT5G51890 453 / 1e-161 Peroxidase superfamily protein (.1) Lus10008168 [exp] 225 / 7e-71 AT5G06720 393 / 5e-137 peroxidase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G156100 [exp] 422 / 2e-147 AT1G30870 352 / 8e-120 Peroxidase superfamily protein (.1) Potri.010G175100 [exp] 382 / 2e-132 AT1G30870 299 / 5e-100 Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 248 / 2e-80 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 241 / 8e-78 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 241 / 8e-78 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 241 / 8e-78 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 241 / 8e-78 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 241 / 2e-77 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.007G122100 [exp] 236 / 9e-76 AT1G05260 496 / 3e-178 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.007G019300 [exp] 235 / 3e-75 AT5G66390 507 / 0.0 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10038393 pacid=23158196 polypeptide=Lus10038393 locus=Lus10038393.g ID=Lus10038393.BGIv1.0 annot-version=v1.0 ATGAGGACCTTCGTTTTCATCTTCGCCATTCTTTGCTTCCGATCGGCTTTTGCTGGTGTTAACTTCGACGAAAACAACAACAACGACGAAGCAATAACAC TACAAGTGTCGACATTGCTCGACACTTCGTCGTCTGACAACGATTTGCTGTCGTTTGCCTATTACCAAGGCACTTGCCCCGAAGCTGAAGGCATCATCAA CCGTAAAGTTCGCGATTGGGCCAAGAAGGATCCGACTCTCGCTGCTAGCCTCATGCGCCTCCACTTTCACGACTGTGCCGTTAGGGGTTGTGATGCTTCA ATTCTACTGAGCAACGTAGGAAGCGAGAGGACAGCACACGCCAGCAAGACCCTACGTGGGTTTGAAGTGATTGACGACATCAAGAAGGAACTCGAAAGCA AATGCCCCAAAACGGTGTCGTGCGCTGACATTCTTACCGCAGACTCACGGGACGCCACTGTTATTCTGGGAGGTCCATACTGGTCAATCCCCTACGGGAG AAAAGACGGGAAAGTTTCGACTGAAAAAGAAGCCGAATTGGTGCCGATGGGTCGCGAAAACATTACCGCTCTCATCCAGTTCTACCAGTCTAAAGGCCTC AACGTGCTTGATCTTGTCGCTCTCTCAGGAGCGCATACCGTTGGTCGGGCGAGCTGCGGGGAGATTCAAGACAGGATCTACGACTACAAGGGAAGTGGAA AATCAGATTCAACGATGGACAAGAAATACTCAAACTATCTTACCAGGAAATGCAGGTGGGGTTCGGACTACGTTGAGCTTGATGCCATAACGCCAGACAA GTTCGACAACCAGTACTACAAGAATCTACAGAGGAAGATGGGACTTTTGCGGACTGATCAAGCCATGTACGCCGATTCCAGGACTTCCCCCTTCGTTAAC GCGTTGGCTTACGCTCCACCTTCTGTGTTCTACAACCAGTTCGCTGCGTCGATGGCCAAGCTTGGCAATGTAGTTGAGGACGTGGATGATGGCGAGGTGC GGACCAACTGCAATTATGTCAACTCTGTCCATTACTGA
AA sequence Show only first row Show all	>Lus10038393 pacid=23158196 polypeptide=Lus10038393 locus=Lus10038393.g ID=Lus10038393.BGIv1.0 annot-version=v1.0 MRTFVFIFAILCFRSAFAGVNFDENNNNDEAITLQVSTLLDTSSSDNDLLSFAYYQGTCPEAEGIINRKVRDWAKKDPTLAASLMRLHFHDCAVRGCDAS ILLSNVGSERTAHASKTLRGFEVIDDIKKELESKCPKTVSCADILTADSRDATVILGGPYWSIPYGRKDGKVSTEKEAELVPMGRENITALIQFYQSKGL NVLDLVALSGAHTVGRASCGEIQDRIYDYKGSGKSDSTMDKKYSNYLTRKCRWGSDYVELDAITPDKFDNQYYKNLQRKMGLLRTDQAMYADSRTSPFVN ALAYAPPSVFYNQFAASMAKLGNVVEDVDDGEVRTNCNYVNSVHY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30870			Peroxidase superfamily protein...		Lus10038393 [exp]	0	1
AT5G22410		RHS18	root hair specific 18 (.1)		Lus10004859 [exp]	1.0	0.9748
AT4G02270		RHS13	root hair specific 13 (.1)		Lus10005539 [exp]	3.5	0.8970
AT3G10710		RHS12	root hair specific 12 (.1)		Lus10033399 [exp]	3.7	0.9340
AT1G30870			Peroxidase superfamily protein...		Lus10001228 [exp]	5.2	0.9253
AT5G05500		MOP10	Pollen Ole e 1 allergen and ex...		Lus10040948 [exp]	6.0	0.9191
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10043232 [exp]	6.6	0.8719
AT1G63450		RHS8	root hair specific 8 (.1)		Lus10000604 [exp]	6.7	0.9023
AT1G12560		ATHEXPALPHA1.26...	expansin A7 (.1)		Lus10024478 [exp]	8.4	0.8748
AT4G02270		RHS13	root hair specific 13 (.1)		Lus10041926 [exp]	9.2	0.8833
AT5G05500		MOP10	Pollen Ole e 1 allergen and ex...		Lus10009837 [exp]	9.4	0.8807

Compare expression of checked genes

Lus10038393 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.