Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17370 114 / 3e-29 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001227 [exp] 363 / 5e-125 AT5G17370 301 / 8e-97 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G075300 [exp] 130 / 4e-35 AT5G17370 436 / 6e-149 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038394 pacid=23158237 polypeptide=Lus10038394 locus=Lus10038394.g ID=Lus10038394.BGIv1.0 annot-version=v1.0 ATGCTAATAACTGGTTATAATGAAACTGTGATTGTGTGGCCAGAGCTTCCAGGGTTTTACTATGACGCGGTGAAGAACAGATACTTCCCCCTCAAAGGCC GAATTCCTTGCTCTGCTTCTTCTTCTTCTTTTTCATCTGCTGCCCCTGATAGTCAAACCCCTAAAAAAGCAAAGACTTCCAAGAAGGATGACAATATTTG CGGGAGTAGAGTAAGAACACATCGACTGATTCAGGGGAGGGAGTTAAATGGCAATGTGGTTTCTGTTGGTAAATCAAAATATAATGTTGTCCATGAATGC CCGAAGGCACAAGCTTCACAGCCTACTGTTTGGAGGTATAAGGGGTCTTCAATTTCGTCATGTGATGCTGGTTTGGACGAGGTGAGTATTCCAATGGAAA CGCCAGATGGTCTAGTAGATCGGAAAGTTCTTCTGGCAGGAAGTCAAAATCAATGCTTGAGTATTCTAAATGTTTTTAAAGGTGAACAACATTCGTTTCA TGCGCCAAACGCTGCCATGCCAGATCGTGTCTGGCCTGCAGTGGCATCAAAAATAACAAGATGCAGTAAAGCCCCTGAGGAAGTCTCTGTGTGGTTAAAT TATCGTATGGATTCGGCCATTTCTTCTGTAAAACTACTGCAGAAGAACTCTCATCCAAATGATGATTTGGGTTGTGAGATTCAGTATGGATTGTATCCTT TATACTTGATGCTCTGGACATTATTTGGTGACCCTTAA
AA sequence Show only first row Show all	>Lus10038394 pacid=23158237 polypeptide=Lus10038394 locus=Lus10038394.g ID=Lus10038394.BGIv1.0 annot-version=v1.0 MLITGYNETVIVWPELPGFYYDAVKNRYFPLKGRIPCSASSSSFSSAAPDSQTPKKAKTSKKDDNICGSRVRTHRLIQGRELNGNVVSVGKSKYNVVHEC PKAQASQPTVWRYKGSSISSCDAGLDEVSIPMETPDGLVDRKVLLAGSQNQCLSILNVFKGEQHSFHAPNAAMPDRVWPAVASKITRCSKAPEEVSVWLN YRMDSAISSVKLLQKNSHPNDDLGCEIQYGLYPLYLMLWTLFGDP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17370			Transducin/WD40 repeat-like su...		Lus10038394 [exp]	0	1
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10008840 [exp]	9.8	0.9365
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Lus10005338 [exp]	11.0	0.9327
AT3G47570			Leucine-rich repeat protein ki...		Lus10037310 [exp]	15.3	0.9216
AT2G37050			Leucine-rich repeat protein ki...		Lus10019237 [exp]	17.3	0.9332
AT3G53810			Concanavalin A-like lectin pro...		Lus10003224 [exp]	18.2	0.9300
					Lus10000100 [exp]	18.4	0.9276
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Lus10025990 [exp]	18.8	0.9224
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Lus10018231 [exp]	19.7	0.9230
AT3G26380			Melibiase family protein (.1)		Lus10011407 [exp]	24.8	0.9244
AT3G53400			unknown protein		Lus10026502 [exp]	25.7	0.9256

Compare expression of checked genes

Lus10038394 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.