Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66520 285 / 1e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G33350 280 / 1e-88 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G08305 270 / 5e-85 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05750 268 / 1e-84 PDE247, CLB19 pigment defective 247, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37380 270 / 9e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62890 261 / 6e-81 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G15930 259 / 4e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G50270 253 / 1e-77 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G44880 251 / 1e-77 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G29760 255 / 2e-77 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014298 [exp] 281 / 4e-88 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 277 / 2e-86 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 267 / 7e-83 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005987 [exp] 261 / 8e-82 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030125 [exp] 260 / 2e-81 AT2G20540 618 / 0.0 mitochondrial editing factor 21 (.1) Lus10031430 [exp] 255 / 1e-80 AT5G06540 350 / 1e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029853 [exp] 257 / 3e-80 AT1G09190 575 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024971 [exp] 258 / 3e-79 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010901 [exp] 252 / 5e-79 AT3G15930 360 / 2e-118 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G155600 [exp] 454 / 5e-158 AT5G66520 306 / 3e-98 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G369900 [exp] 294 / 5e-93 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 288 / 9e-90 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G231200 [exp] 282 / 7e-89 AT5G66520 504 / 1e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G050200 [exp] 278 / 6e-87 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G035900 [exp] 271 / 2e-85 AT2G20540 709 / 0.0 mitochondrial editing factor 21 (.1) Potri.003G223900 [exp] 269 / 2e-84 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G237000 [exp] 270 / 7e-84 AT5G66520 544 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 268 / 4e-83 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G086100 [exp] 264 / 2e-82 AT5G15300 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10038396 pacid=23158208 polypeptide=Lus10038396 locus=Lus10038396.g ID=Lus10038396.BGIv1.0 annot-version=v1.0 ATGCCACTTCTACTATGTCACCTCCTCAAACCCATCAGATCCCCACTGCTCCACCGCTGCTTCGTCGCCGGGAAATACTTCCACCACAACTCACGGGATC CATCAGCAATCATGCAACGCGCTTCCACCTCGATCGAGGCACTGGAACTCTACTGCAAAATTCACCGCCAATCTTCCGATAAGCTCGACAGCTATTCCCT GCTATCCGCCATGAAATCATCCACCGGTTTAGACGACGCAAGGATCGTCATCAGCCACTTGCACACCCACGCCATCAGGGTAGGATACAGTAGTAACGTC TACGTCGCAACTTGTCTCCTCTCTTCGTATGTGTCCACAGCGTCATTTCGTGATGCACGATTGCTGTTCGACGAAATGCCTGAAAGAACCTCCGTCACCT GGAATGTTATGATTACAGGGTATGCCAGGTCCGGGGACGTAGGCAAGGCACGGGAAGTGTTTGATGAAATGCCGCAGAGAAATGTCGAGTCTTGGTCTGC TATGATCACAACTTATCTTCGTAGTGGATGCTGGAATAAAGCTCTGTCCCTGTTTCGGGAGATGGTTGTTGAAGCAAATGGAGGAATGGTGAAGCCTGAT AAAGTGACATTGGGAACTGTTCTATCTTGCTGCGTACAAATGGGTTGTCCTGGATCGTTGCCTGGAAGGTCAGTTCATTGTTATCTGTTGAGAAATGAAA TTAAGATGAATGTGGAGATCGGTACTGTTCTTGTTGACATGTATGCCAAGTTGGGGTTTCTGAATTACGCTTGCTTAGTCTTTAATTCCATCAAAGAAAG AAATGTCGCGACTTGGACTGTATTAATTTGCGGTGCGGCTCAGAATGGATGTAGTCAAGAAGCATTATCCTTATTCGAGGCGATGAAAGAACAAGATGTT GAACCGAATGAGATGACTTTTACAGGCGTTCTACATGCTTGTGCTCACAGCGGGTTAGTGGAGCAAGGGCGACGGTACTTCGAGATGATTAAAGAGTACG GCTTGGAGCATAGGATTCAGCACTATGGATGCATGGTTGATCTGTACGGAAGGGCAGGGCTGGTGGAAGAAGCTCATGATGTTATCACGAGAATGGAGCT CGAACCAAGTTCTGCTGTTTGGGGATCGTTTCTGTCGGCTTGTAAGGCGCATCGTAGGTTTGATATGGCTGAGAAGGTGATGGAGCAAGTTCAGAGAGCT GTGAAGCCAGAGACTGATGGAGGGATATTCAATCAGATGTGTGATTTGTATGTTGCAAATGATCAGTGGGAGGATGCGGAAAGAGTCAGGAAACTAATGG TTAATAGGAATGTGAGGAAAGTTAGGGGCAGCAGCTTTGTTGGAAGCAGACACTCGTGA
AA sequence Show only first row Show all	>Lus10038396 pacid=23158208 polypeptide=Lus10038396 locus=Lus10038396.g ID=Lus10038396.BGIv1.0 annot-version=v1.0 MPLLLCHLLKPIRSPLLHRCFVAGKYFHHNSRDPSAIMQRASTSIEALELYCKIHRQSSDKLDSYSLLSAMKSSTGLDDARIVISHLHTHAIRVGYSSNV YVATCLLSSYVSTASFRDARLLFDEMPERTSVTWNVMITGYARSGDVGKAREVFDEMPQRNVESWSAMITTYLRSGCWNKALSLFREMVVEANGGMVKPD KVTLGTVLSCCVQMGCPGSLPGRSVHCYLLRNEIKMNVEIGTVLVDMYAKLGFLNYACLVFNSIKERNVATWTVLICGAAQNGCSQEALSLFEAMKEQDV EPNEMTFTGVLHACAHSGLVEQGRRYFEMIKEYGLEHRIQHYGCMVDLYGRAGLVEEAHDVITRMELEPSSAVWGSFLSACKAHRRFDMAEKVMEQVQRA VKPETDGGIFNQMCDLYVANDQWEDAERVRKLMVNRNVRKVRGSSFVGSRHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10038396 [exp]	0	1
AT1G34160			Tetratricopeptide repeat (TPR)...		Lus10029401 [exp]	1.4	0.8961
AT3G55605			Mitochondrial glycoprotein fam...		Lus10001017 [exp]	3.2	0.8810
AT5G52630		MEF1	mitochondrial RNAediting facto...		Lus10011323 [exp]	3.5	0.8515
AT5G66500			Tetratricopeptide repeat (TPR)...		Lus10041770 [exp]	4.2	0.8662
AT3G23710		AtTic22-III	translocon at the inner envelo...		Lus10022378 [exp]	4.5	0.8288
AT2G41080			Tetratricopeptide repeat (TPR)...		Lus10022629 [exp]	5.0	0.8533
AT5G47460			Pentatricopeptide repeat (PPR)...		Lus10028953 [exp]	5.7	0.8281
AT4G26780		MGE2, AR192	mitochondrial GrpE 2, Co-chape...		Lus10032565 [exp]	6.5	0.8066
AT5G08305			Pentatricopeptide repeat (PPR)...		Lus10017387 [exp]	6.6	0.7731
AT4G31580		SRZ22, RSZP22, ...	RS-containing zinc finger prot...		Lus10012994 [exp]	6.9	0.8274

Compare expression of checked genes

Lus10038396 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.