Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40400 48 / 3e-06 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 48 / 4e-06 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G19890 43 / 0.0001 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G25210 42 / 0.0002 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G18020 42 / 0.0002 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65820 42 / 0.0003 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G29290 40 / 0.001 EMB2076 embryo defective 2076, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 40 / 0.001 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001223 [exp] 433 / 6e-156 AT4G20090 53 / 6e-08 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10037319 [exp] 47 / 8e-06 AT4G11690 534 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10039056 [exp] 46 / 1e-05 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013841 [exp] 43 / 0.0001 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015113 [exp] 43 / 0.0001 AT1G09900 364 / 5e-119 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015059 [exp] 42 / 0.0003 AT3G09650 969 / 0.0 HIGH CHLOROPHYLL FLUORESCENCE 152, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010410 [exp] 42 / 0.0004 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 42 / 0.0005 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038974 [exp] 41 / 0.0006 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G075700 [exp] 247 / 3e-82 AT4G20090 65 / 7e-12 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G015900 [exp] 49 / 2e-06 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050500 [exp] 47 / 5e-06 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.016G025600 [exp] 47 / 6e-06 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G248100 [exp] 43 / 9e-05 AT3G25210 506 / 2e-180 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G013300 [exp] 44 / 0.0001 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G131400 [exp] 43 / 0.0002 AT1G09680 669 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G045000 [exp] 43 / 0.0002 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050240 [exp] 41 / 0.0005 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.008G108300 [exp] 41 / 0.0005 AT3G16890 771 / 0.0 pentatricopeptide (PPR) domain protein 40 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10038398 pacid=23158280 polypeptide=Lus10038398 locus=Lus10038398.g ID=Lus10038398.BGIv1.0 annot-version=v1.0 ATGAATTCATTGAGGCAGTGCCACCACCTACAATCACTGACCTTCCTTTCGAGATCGATCTGCTTCTCTCCAGTCTTACAGCATGGAGAAACAACAGCCT CCACCAACACACAACCAACAACGCTCACCAACGAAGAGATAACCAAAATCAACCTCCTAATCCCACGGCTATGCATCGTCTCCAACAACCTCCCCACAGC AATCCACCTCATAACAACAGCACTCCTCACAAACCCACCTCCAAAGTCCTTATCTTTATCCATCTTCATCCACTCCCTCACCTTAGAGCCTGACATGGCC AAACCGATGTCACTCCTCACAGTTCTAAGGCACAACCCATCTGCCCATTCTTACCAGAGCCCCATCGCATCATTGCTCATCTCCTCTTACTTGAAAAGGA ATCGACCCAAAGAGGCGTTGAAAGTGTACCACTGGATGCTTAGGCCTGGCTCTCTTTGTAAAGTGGAGAAGAATGTGTATGGGGTTTTGCTCTATGGGGT TTGCAAGCTAGGGTTGGCTTTTGAATCCTTGAAGATTTTGAAGGATATGGTTGGTGTTGGGTTGGTACCTGGGGATGGATTGAGGAAGATGGTTGTGAGG AACTTGCTGTGGGAAGCTAGAGTTACTGAGGCTGTTGACCTTGATGCTGCCTTGAGTGGCTGCTGCATTGATGGTGAGGGTTTTGAGAAATTGATGAGTC TTTTGGATTCTTTGGCTGAGAATTGGAGAGACTGA
AA sequence Show only first row Show all	>Lus10038398 pacid=23158280 polypeptide=Lus10038398 locus=Lus10038398.g ID=Lus10038398.BGIv1.0 annot-version=v1.0 MNSLRQCHHLQSLTFLSRSICFSPVLQHGETTASTNTQPTTLTNEEITKINLLIPRLCIVSNNLPTAIHLITTALLTNPPPKSLSLSIFIHSLTLEPDMA KPMSLLTVLRHNPSAHSYQSPIASLLISSYLKRNRPKEALKVYHWMLRPGSLCKVEKNVYGVLLYGVCKLGLAFESLKILKDMVGVGLVPGDGLRKMVVR NLLWEARVTEAVDLDAALSGCCIDGEGFEKLMSLLDSLAENWRD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10038398 [exp]	0	1
					Lus10017305 [exp]	4.6	0.9604
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031265 [exp]	4.7	0.9530
AT1G08290	C2H2ZnF	WIP3	WIP domain protein 3 (.1)		Lus10004887 [exp]	8.7	0.9483
AT1G72620			alpha/beta-Hydrolases superfam...		Lus10019631 [exp]	11.5	0.9477
AT4G17220		ATMAP70-5	microtubule-associated protein...		Lus10038790 [exp]	13.4	0.9427
AT1G68585			unknown protein		Lus10035025 [exp]	15.3	0.9397
AT2G39530			Uncharacterised protein family...		Lus10023416 [exp]	15.9	0.9401
AT4G22758			unknown protein		Lus10006995 [exp]	16.1	0.9249
AT3G23430		PHO1, ATPHO1	ARABIDOPSIS PHOSPHATE 1, phosp...		Lus10021164 [exp]	16.5	0.9354
AT1G55180		PLDALPHA4, PLDE...	phospholipase D alpha 4 (.1)		Lus10036361 [exp]	17.0	0.9476

Compare expression of checked genes

Lus10038398 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.