Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57430 1069 / 0 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 578 / 0 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 577 / 0 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G18485 573 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G03580 551 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 533 / 3e-177 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 530 / 1e-175 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 528 / 4e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 517 / 5e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30700 515 / 9e-171 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001220 [exp] 1640 / 0 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 589 / 0 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 586 / 0 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007806 [exp] 575 / 0 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 574 / 0 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014707 [exp] 567 / 0 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 565 / 0 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019735 [exp] 560 / 0 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 551 / 0 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G075800 [exp] 1207 / 0 AT3G57430 1189 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 606 / 0 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 586 / 0 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G047600 [exp] 586 / 0 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G215500 [exp] 584 / 0 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 581 / 0 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G466066 [exp] 566 / 0 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 560 / 0 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G044700 [exp] 548 / 0 AT3G22690 582 / 0.0 unknown protein Potri.003G006800 [exp] 533 / 1e-177 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10038400 pacid=23158276 polypeptide=Lus10038400 locus=Lus10038400.g ID=Lus10038400.BGIv1.0 annot-version=v1.0 ATGTCATCTCCCTACACTCTGCAACCTCTCGCATCAATCTCCCTTCCCTCACCGGCGTCTCCTCCGTCTCATCAAACTCACAGACCCACATTACAGCTGC ACAATCACTCCTCTCCTCGCCCTCTTCTCTCCACTCCAGAACCTCCCACTTCCAATTCTCGGCCTTGGGTGGAGTCCCTACGAGCCAAAACCCGTTCCAA TCACTTCCATGAAGCTGTTTCCATCTACAACGAAATGATCATCTCAGGTACGCAACCAGATAGTTTCATCTTCCCCGCGGTTCTCAAGGCTGTTGCCTCT CTTCAGGACTTGCGTTTGGGGAAGCAGATTCACGCCCACGCTGTTAAATTCGGGCATGGAGGAGCCTCTGTAGTCAGTGTAGCTAATTCGCTTGTGAATC TGTACGGGAAATGTGGAGAGCTAAATGATGCACGGAAAGTGTTTGATGAAATTACTGAGAGAGACGCTGTTTCATGGAATTCGATAATTGCTGCTCTATG TAGAGATGAGGAATGGGAGGATGCCCTGGAATCGTTTCGATTGATGCTAGCTGAGAATCTCGAGCTTAGTTCGTTCACATTGGTGAGTGCGGCATTTGCT TGTTCGAACTTGCACAAGGGTGATGGGTTGCCACTTGGGAAGCAACTCCATGGATACAGTCTCAGGACGAGTCGCTGGAAGGAAACGTTCACTAACAACG CTTTGATGTCTATGTACGCTAAGCTGGAGAGAGTAGACTATGCCAAAAGTATGTTTCAGTTATTCGAGGGTCGTGACTTGGTTTCGTGGAACACCATGAT AAGCTCGTTGACGCAGAACAAAAGGTTCATGGATGCTCTAGTTTCATTGCAGCTTATGGTTCGTGAAGGAATCAAAGCCGATGGGGTTACGTTAGCAAGC GTTCTTCCAGCTTGCTCTAGCTTGGAGATGTTAGCTTCCGGGAAGGAGATCCATGCTTATGCCTTGAGAAATGGGGAGCTGATTGAAAACTCGTTTGTTG GTAGTGCTTTGGTTGACATGTATTGCAACTGTGGACAGGTTGAAACCGGGCGTCGGGTTTTCGATCGTATCTTGGATCGAAGGATTGGTGTTTGGAATGC CATGATTACTGGATATGCACAAAACGAGAATGATGAGCTGGCATTGATTCTCTTCCTTGATATGGAGACGGATTCTAGACTCCGCCCCAATGCAACCACG ATGTCCAGTGTTGTACCTGCTTGTGTTCGGTCTGAAGCATTCTCTGCTAAAGAAAGCATTCACGGATTTGCTGTGAAGATGGGTCTCGAGACTAATCGGT ATGTGCAGAATGCACTTATGGATATGTACAGCAGAATGGGGAGGATGGAAATTTCAAAGTTGATATTTGATAGCATGGAGGTTAAAGATGTAGTTTCCTG GAACACCATGATCACTGGCTATGTCATTAAGGGATGCTTCGATGAAGCACTCGTGATGCTACAAGCCATGCAAATTTCTTTCAGACCTAATTCGATAACC TTGATGACAATGCTTCCGGGATGTGCTTGGATGGCAGCACTAGCCAAAGGGAAAGTGATCCACGGTTATGCAATTCGAAACGCATTGGCTTCCGATGTTG CAGTCGGGAGTGCACTGGTTGACATGTACGCGAAATGTGGGTGCTTGAACTTAGCCAGGAGAGTGTTCACTGAAATGCCTAGGAAAAATGTAGTCACTTG GAATGTGATCATGATGGCCTATGGGATGCATGGGAAAGGAGAGGAAGCATTGCAACTTTTCCAAGACATGGTGTCTGAAGCCAAGGCTGGAGGAGTGAAG CCTACTGAAATCACTTTCATATCCGTGATTGCTGCTTGCAGTCACTCGGGTATGGTGGATGAGGGACTCGGCATATTCCGTAGCATGAAGGATGATCATG GGATTGAAGCTACAGCAGATCACTATGCTTGCACAGTCGACTTACTTGGTCGAGCCGGTCAAGTGGAGCTAGCTTACAAGCTAGTTAGTTCAATGCCATC TGGTTTTGATAAGATAGGGGCATGGAGTAGCTTACTTGGAGCTTGTCGACTGCACCAGAAAGTTGAAATCGGCGAAATTGCTGGAGAAAGTCTCATCCGA TTGCAACCGGATGTCGATAGCCACTATGTTCTTCTATCCAATGTGTACGCAACTGCTGGCTTGTGGGAGAAGGCAATGTCTGTTAGGAAAAGGATGGGCG ATTTACGAATGAAGAAAGTTCCCGGATGGAGTTGGATCGAGAACCGAGACGAAGTGCACAGGTTTCTTGCTGGAGACAACTCACACCCGCAAAGCGAGCA GATCCACAGCTTCCTCGAGGTGCTATTGGCAACAATCAGAAAAGAAGGGTACATCCCCGACACTTCCTGCGTACTTCACGATGTTACTGAAGATGAGAAA GAGAAACTACTCTGCGGGCATAGCGAGAAGCTCGCAATAGCATTCGGCATCCTCAACACCCCACCTGGAACCACCATTAGAGTGGCTAAGAACCTCAGAG TGTGTAACGACTGCCATACTGTGTCAAAGTACATTTCCAAGGTTGAGCAGAGGGAGATCATTCTAAGAGACGTAAGAAGGTTCCATCATTTCAGTAATGG ACATTGTTCCTGTGGTGATTATTGGTGA
AA sequence Show only first row Show all	>Lus10038400 pacid=23158276 polypeptide=Lus10038400 locus=Lus10038400.g ID=Lus10038400.BGIv1.0 annot-version=v1.0 MSSPYTLQPLASISLPSPASPPSHQTHRPTLQLHNHSSPRPLLSTPEPPTSNSRPWVESLRAKTRSNHFHEAVSIYNEMIISGTQPDSFIFPAVLKAVAS LQDLRLGKQIHAHAVKFGHGGASVVSVANSLVNLYGKCGELNDARKVFDEITERDAVSWNSIIAALCRDEEWEDALESFRLMLAENLELSSFTLVSAAFA CSNLHKGDGLPLGKQLHGYSLRTSRWKETFTNNALMSMYAKLERVDYAKSMFQLFEGRDLVSWNTMISSLTQNKRFMDALVSLQLMVREGIKADGVTLAS VLPACSSLEMLASGKEIHAYALRNGELIENSFVGSALVDMYCNCGQVETGRRVFDRILDRRIGVWNAMITGYAQNENDELALILFLDMETDSRLRPNATT MSSVVPACVRSEAFSAKESIHGFAVKMGLETNRYVQNALMDMYSRMGRMEISKLIFDSMEVKDVVSWNTMITGYVIKGCFDEALVMLQAMQISFRPNSIT LMTMLPGCAWMAALAKGKVIHGYAIRNALASDVAVGSALVDMYAKCGCLNLARRVFTEMPRKNVVTWNVIMMAYGMHGKGEEALQLFQDMVSEAKAGGVK PTEITFISVIAACSHSGMVDEGLGIFRSMKDDHGIEATADHYACTVDLLGRAGQVELAYKLVSSMPSGFDKIGAWSSLLGACRLHQKVEIGEIAGESLIR LQPDVDSHYVLLSNVYATAGLWEKAMSVRKRMGDLRMKKVPGWSWIENRDEVHRFLAGDNSHPQSEQIHSFLEVLLATIRKEGYIPDTSCVLHDVTEDEK EKLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHTVSKYISKVEQREIILRDVRRFHHFSNGHCSCGDYW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10038400 [exp]	0	1
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10001220 [exp]	3.0	0.9495
AT1G19720			Pentatricopeptide repeat (PPR-...		Lus10001230 [exp]	3.2	0.9374
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10001060 [exp]	7.3	0.9272
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10013636 [exp]	7.7	0.9356
AT5G22640		EMB1211	embryo defective 1211, MORN (M...		Lus10009392 [exp]	8.5	0.9298
AT2G42920			Pentatricopeptide repeat (PPR-...		Lus10007341 [exp]	8.7	0.9008
AT3G51820		PDE325, ATG4, G...	PIGMENT DEFECTIVE 325, UbiA pr...		Lus10000126 [exp]	9.2	0.9145
AT1G69710			Regulator of chromosome conden...		Lus10037192 [exp]	9.2	0.8897
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10001332 [exp]	9.5	0.9266
AT1G12800			Nucleic acid-binding, OB-fold-...		Lus10008475 [exp]	11.3	0.9266

Compare expression of checked genes

Lus10038400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.