Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20310 279 / 2e-88 Peptidase M50 family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001219 [exp] 434 / 2e-148 AT4G20310 391 / 3e-131 Peptidase M50 family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G157800 [exp] 263 / 7e-82 AT4G20310 417 / 2e-141 Peptidase M50 family protein (.1.2.3) Potri.001G073200 [exp] 79 / 2e-16 AT4G20310 155 / 3e-45 Peptidase M50 family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF02163 [flax] [poplar] Peptidase_M50 Peptidase family M50
Representative CDS sequence Show only first row Show all	>Lus10038402 pacid=23158440 polypeptide=Lus10038402 locus=Lus10038402.g ID=Lus10038402.BGIv1.0 annot-version=v1.0 ATGGAGAGGCCAAGAAGGATTAGAACGTTCAGAGGAAGGCGACGGAACCACAGTCTACTTCCACTCCGTTCAGACACCATCAGCCGGATCCCTTCTCTTT CCAACGCCATCTCCTGTTGCTACTGTGACTACAAGTTCTCTGCTCTCAACACCTTCCTATTCCGTTTCGGGAGCAGATATTCCCATCAATTGAGAGTTTG GTTCTCGATCGGCGTCGGATTCAGCCTCGCCACTCTCGCCGGAGCTACTCTCCTTCTTGTTTGGGAATTGGCTATTTCCCCTGGAACCAGCTCCTCCAAG CTCGACAATCTCGCCGGCTCCTTCTTGTTCGGGATTTCCCCTCAGGTTTACGGTCTGAGTCTATCCATCGGAGATGCCGCTCATCTGTTTTTTGCGACAC TGGTGTCTGTCTCAGTGCACGAATTCGGCCATGCCATTGCGGCAGCTAGTGAGGGTATCCAGGTGGAATATATAGCTGTGTTCATTGCGGTTTTGTTTCC TGGTGCATTGGTGGCCTTCGACTATGAGAAAATCCATGCCTTGGAGAGGATTAATGCTCTTCGTGTATACTGTGCTGGCATTTGGCATAACGCTGCGTGT TGTGCAGTTTGTGGAGTACTGCTGTTTCTGCTTCCATGGATTTTATGTCCCTTGTACGTGCGTAGTGAACACCCCATGGTTCTGTATGTACCCTCTGCAT CTCTTTTATCTGGGTATTTGTCTCCGGGTGATTTAATTGTGTCACTGGATGGCAAACATGTCCACGATGCGCATAAATTACATGAGGGCTTTATGCAAGC TGAAGGCTCGGTGAAAAGGCTAGAACGATACTGTCTGACCGATAAAGACATCGTCAGTTTAAATAAATGCAGAAGCGGTTGGCTAGGAGAAATCGGTAAG GGGAGCAGCTGCTCGTGTTCAGAGAGTGAGTCCTGCTTAAGTCCTGTTCAGAAGCCAGGTCAAGTATGGGCTGAGATCACCTATTCTCGACCTTATTCCT CAGAATGCCTACACCTTGATAAAGATTATTCTGCAGATTCTGTAACTGTAGACTTGATACCTGACAAGTGTCGTGGAACATTCGTTTTCATCGGTGATCT GGTGTCCATGGCACATTCAGTCCAGTTAACTTCATACCAACCTCGATATCTATTTCCATTCAGTGCTCATCTCCCCAAGGTTCTGGAAATGGCAGCCATT TGCATCTTCTACGTTTCTCTAACTCTAGCTCTCCTAAACAGTTTGCCGGTGTTTTATCTGGACGGCGAGTCGATTCTCGAGCTAGCGCTGTGCTACTGCA CCTGGATGCGCCCGAGTAAGAGAGCGAAAGCTCTCAGGGCATGTCTCATTTGTGGGACACTCATTTCTTTAGTGGCCTTTCTTAAGATCCTCATGTTTAC CGTCTTCACTGGACACGGTATGTAG
AA sequence Show only first row Show all	>Lus10038402 pacid=23158440 polypeptide=Lus10038402 locus=Lus10038402.g ID=Lus10038402.BGIv1.0 annot-version=v1.0 MERPRRIRTFRGRRRNHSLLPLRSDTISRIPSLSNAISCCYCDYKFSALNTFLFRFGSRYSHQLRVWFSIGVGFSLATLAGATLLLVWELAISPGTSSSK LDNLAGSFLFGISPQVYGLSLSIGDAAHLFFATLVSVSVHEFGHAIAAASEGIQVEYIAVFIAVLFPGALVAFDYEKIHALERINALRVYCAGIWHNAAC CAVCGVLLFLLPWILCPLYVRSEHPMVLYVPSASLLSGYLSPGDLIVSLDGKHVHDAHKLHEGFMQAEGSVKRLERYCLTDKDIVSLNKCRSGWLGEIGK GSSCSCSESESCLSPVQKPGQVWAEITYSRPYSSECLHLDKDYSADSVTVDLIPDKCRGTFVFIGDLVSMAHSVQLTSYQPRYLFPFSAHLPKVLEMAAI CIFYVSLTLALLNSLPVFYLDGESILELALCYCTWMRPSKRAKALRACLICGTLISLVAFLKILMFTVFTGHGM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20310			Peptidase M50 family protein (...		Lus10038402 [exp]	0	1
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Lus10037347 [exp]	4.0	0.6046
AT3G57570			ARM repeat superfamily protein...		Lus10026305 [exp]	5.3	0.6301
					Lus10017053 [exp]	5.7	0.5444
AT2G31290			Ubiquitin carboxyl-terminal hy...		Lus10003059 [exp]	10.2	0.6185
AT3G52750		FTSZ2-2	Tubulin/FtsZ family protein (....		Lus10022718 [exp]	23.8	0.5841
AT1G77310			unknown protein		Lus10028666 [exp]	78.3	0.4831
AT5G60230		ATSEN2, SEN2	splicing endonuclease 2 (.1.2)		Lus10036866 [exp]	112.0	0.5334
AT1G48310		CHR18, CHA18	chromatin remodeling factor18 ...		Lus10006642 [exp]	129.6	0.4954
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Lus10008025 [exp]	201.6	0.4921

Compare expression of checked genes

Lus10038402 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.