Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30820 826 / 0 CTP synthase family protein (.1) AT3G12670 806 / 0 EMB2742 embryo defective 2742, CTP synthase family protein (.1) AT4G20320 802 / 0 CTP synthase family protein (.1.2) AT2G34890 746 / 0 CTP synthase family protein (.1) AT4G02120 705 / 0 CTP synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001218 [exp] 1095 / 0 AT1G30820 894 / 0.0 CTP synthase family protein (.1) Lus10010020 [exp] 591 / 0 AT4G02120 624 / 0.0 CTP synthase family protein (.1) Lus10025042 [exp] 548 / 0 AT4G02120 689 / 0.0 CTP synthase family protein (.1) Lus10025043 [exp] 174 / 2e-51 AT4G02120 289 / 1e-96 CTP synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G157900 [exp] 877 / 0 AT1G30820 910 / 0.0 CTP synthase family protein (.1) Potri.001G073100 [exp] 860 / 0 AT1G30820 901 / 0.0 CTP synthase family protein (.1) Potri.010G176500 [exp] 834 / 0 AT3G12670 935 / 0.0 embryo defective 2742, CTP synthase family protein (.1) Potri.008G080100 [exp] 823 / 0 AT3G12670 929 / 0.0 embryo defective 2742, CTP synthase family protein (.1) Potri.014G123200 [exp] 727 / 0 AT4G02120 918 / 0.0 CTP synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0014 [flax] [poplar] Glutaminase_I PF00117 [flax] [poplar] GATase Glutamine amidotransferase class-I CL0023 [flax] [poplar] P-loop_NTPase PF06418 [flax] [poplar] CTP_synth_N CTP synthase N-terminus
Representative CDS sequence Show only first row Show all	>Lus10038403 pacid=23158414 polypeptide=Lus10038403 locus=Lus10038403.g ID=Lus10038403.BGIv1.0 annot-version=v1.0 ATGAAGTATGTACTCGTGACTGGCGGAGTTGTGAGCGGACTCGGGAAAGGAGTCACTGCTAGTAGTATTGGAGTCCTTCTCAAGGCTTGTGGCCTTCGCG TTACTTCCATCAAAATCGATCCTTACTTGAACTTTGATGCTGGAACAATGTCACCTTTTGAGCATGGAGAAGTGTTTGTCCTGGACGACGGGGGTGAGGG TGTCATGGACAAAGAGAGAAGGGGAGACTATCTGGGAAAGACCGTACAGTATGTGCCTCACGTTACAGATGCTATTCAAGAATGGATAGAACGCGTTGCC TTGGTGCCTGTGGATGGAAAGCAAGGTCCTGCTGATGTCTGCGTCATTGAATTGGGTGGAACAATCGGAGACATCGAAGGCAAACCATTTATTGAGGCTC TGAGCCAGTTTTCCTACAGAGTTGGTGCTGGCAACTTTTGCTTGGTTCATGTTAGTCTTGTTCCTGTTCTGAGTGTTGTGGGTGAACAGAAAACAAAACC AACTCAGCATAGTGTTGGGAATCTAAGAGGCCTTGGATTGACTCCGGATCTCTTAGCCTGTCGCAGCACATTGGTTCTTGAAGAAAATGTAAAAGATAAA CTTTCGAAGTTCTGCCATGTGCCGATCGAATATATTGTCACTCTGTTTGATGTTCCCAACATTTGGCACATTCCCTTACTACTACGAGATCAGAAAGCTC ACGAAGCTATTTTGAGCGTTCTAAACCTTCATAGCGTCACTAGGGACCCGGACCTGAGGGAATGGACAGCTAGGGCTGAATTGTGTGATGAATTGCATGA ACCGGTCCGAATTGCTATGGTAGGGAAGTACACAGGTCTTTCGGATGCCTATCTTTCTGTTCTGAAGGCTCTCTTGCATGCATGTGTTGCTCTCCATAAA AAGCCTATCATAGATTGGGTTCCAGCTACAGATCTTGAAGATGAAACAGCAAAAGAGAATCCTGATGCTTATAAAGCTGCATGGAAGTTGCTCAAGGGTG CAGATGGTATTCTTGTGCCTGGAGGGTTTGGCGACAGAGGTGTGCAGGGCAAAATTCTTGCAGCGAAGCATGCACGGGAGAATCGAATCCCTTACCTTGG CATCTGCCTAGGGATGCAAACTGCCGTGATTGAATTTGCACGATCCGTTCTCGGTTTGCAAGATGCTAACAGCACAGAATTTGATGCTCTCACCAAGAAT CCGTGTGTCATATTTATGCCTGAGGGCTCGAAAACCCAAATGGGAGGCACCATGAGGCTCGGGTCAAGGAGGACATATTTTCATGTCACAGACTGCAAAA CCGCTAAGCTATATGGAAATAAAAGTTATGTCGATGAGAGGCACCGACATAGATACGAGGTGAATCCTGAAATGGTAGCACGCTTTGAAGAGGCTGGCCT CTCCTTCACTGGCAAGGATGAGACTGGGCAGCGTATGGAGATCATTGAGCTGCCGAATCACCCCTACTTCATTGGCGTTCAATTCCACCCAGAATACAAA TCAAGACCAGGAAAACCTTCTCCTGTGTTCTCAGGTCTTATAGCAGCAGCATGCGGACAACTGGAGGGTGTGTTGCAGCAAAGCCACCACCAGAGGGTGG CGAGCAACAACGGATTCGGCAATGGAGGAAAGGAAAACGGGATTGCGAAGGTAAGCGTCTACCAAAACGGACACCCAACCAAGTTTGCGAAAATGACGAC GAACGGGAATGGTATATACAGCAACGGAGTGCACCACCTCTAA
AA sequence Show only first row Show all	>Lus10038403 pacid=23158414 polypeptide=Lus10038403 locus=Lus10038403.g ID=Lus10038403.BGIv1.0 annot-version=v1.0 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLNFDAGTMSPFEHGEVFVLDDGGEGVMDKERRGDYLGKTVQYVPHVTDAIQEWIERVA LVPVDGKQGPADVCVIELGGTIGDIEGKPFIEALSQFSYRVGAGNFCLVHVSLVPVLSVVGEQKTKPTQHSVGNLRGLGLTPDLLACRSTLVLEENVKDK LSKFCHVPIEYIVTLFDVPNIWHIPLLLRDQKAHEAILSVLNLHSVTRDPDLREWTARAELCDELHEPVRIAMVGKYTGLSDAYLSVLKALLHACVALHK KPIIDWVPATDLEDETAKENPDAYKAAWKLLKGADGILVPGGFGDRGVQGKILAAKHARENRIPYLGICLGMQTAVIEFARSVLGLQDANSTEFDALTKN PCVIFMPEGSKTQMGGTMRLGSRRTYFHVTDCKTAKLYGNKSYVDERHRHRYEVNPEMVARFEEAGLSFTGKDETGQRMEIIELPNHPYFIGVQFHPEYK SRPGKPSPVFSGLIAAACGQLEGVLQQSHHQRVASNNGFGNGGKENGIAKVSVYQNGHPTKFAKMTTNGNGIYSNGVHHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30820			CTP synthase family protein (....		Lus10038403 [exp]	0	1
AT1G30820			CTP synthase family protein (....		Lus10001218 [exp]	1.0	0.9075
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Lus10016978 [exp]	4.2	0.8659
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10001087 [exp]	4.5	0.8456
AT1G29660			GDSL-like Lipase/Acylhydrolase...		Lus10032316 [exp]	5.7	0.8717
AT1G63300			Myosin heavy chain-related pro...		Lus10014980 [exp]	6.5	0.8454
					Lus10015658 [exp]	8.5	0.8552
AT5G62350			Plant invertase/pectin methyle...		Lus10038914 [exp]	9.2	0.8073
AT3G24330			O-Glycosyl hydrolases family 1...		Lus10033082 [exp]	9.4	0.8394
AT1G74160			unknown protein		Lus10017857 [exp]	10.9	0.8396
AT1G74160			unknown protein		Lus10034677 [exp]	12.0	0.8096

Compare expression of checked genes

Lus10038403 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.