Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44600 301 / 5e-101 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G44590 280 / 2e-92 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G63100 126 / 2e-33 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001217 [exp] 446 / 5e-158 AT5G44600 197 / 1e-60 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10015621 [exp] 160 / 2e-46 AT5G63100 333 / 3e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10037637 [exp] 154 / 9e-45 AT5G63100 323 / 7e-111 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G073000 [exp] 354 / 8e-122 AT5G44600 331 / 1e-112 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G082432 [exp] 164 / 4e-47 AT5G63100 360 / 8e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038404 pacid=23158296 polypeptide=Lus10038404 locus=Lus10038404.g ID=Lus10038404.BGIv1.0 annot-version=v1.0 ATGCATTCGTTACCATTGTTGAATTCCGTCGCTTCTTCCATCACAATCAATCCTTGCTCGGGGGATTGCCGCCGGTGCTTCTTCACCAATGGCCTTCCTT CCTATCTCCGGAGAAAGACCATAGCTTTTTTGCCGCCGCCCTTAACTCGTCGGCGCAATTTCCGTGCCTCCGCTCAGGATGGCAGCAATGTAATTAGCGG AGGACAGAAGGGACAAAAAGAAGGAGAAGGGGAGGAAGATTTGCAGTTGGTAACAGCTATAAGGAGCCAGTACAATCACATAGCAATTGTGGATACTCCT TCCGCTAGGGTTTTGCTCCTCGATCCTACTCATAGTGTGCATAGCATTCTTCAAAAGGACCAGAAATGGAGCGACTCGTACTGGGACGAGTTTGCAAGCT TGCCTCCTATAGTTCCAGAAGGTCCTATTTCAATTCTAGGCCTGGGTGGTGGTACCGCTGCACATTTGATGCTTGACTTGTGGCCTTCATTGCAACTTGA AGGATGGGAAATTGACGAGATTCTAATTGATAAAGCAAGGATTTACTTTGGGCTCTCTGAATTGGAGAAGAAGACTCCAGCTGGCGGTTGTCTTCATGTT TGCATTGGGGATGCTCTTCAATCTACTGGGAATGATCAGGGAAAATATGCTGGCATTATTGTCGACTTGTTCAACGAGGGGAAGGTTTTGCCAGAATTGG AACAGGTGTCCACTTGGTTGGAACTGAAGAGGAGACTGATGGTGAATGGTCGGATTATGGTGAACTGTGCTGGAATTCATGGGAGTGGGACATCAGACAT GGTAGACAGGAGGAATCATCTTGAAGGGAAATGGGGTGAACATGCTGTCATCAAAGCCATGCATGAAGCATTTCCTGGGGAACTGAGTTGGAAGAGGATG CCGGACAAAAAGGGTGCGAACTACCTTGCATTGACGGGGCCACTACCGGATCTGTCGTGGTGGTCCGGGATGGTACCGGATGAGTTGAGTGAAAGTGTGA AGCAGTGGAGGAGGGCCTGCAATCTTGAAGGACCAACCACACACTGA
AA sequence Show only first row Show all	>Lus10038404 pacid=23158296 polypeptide=Lus10038404 locus=Lus10038404.g ID=Lus10038404.BGIv1.0 annot-version=v1.0 MHSLPLLNSVASSITINPCSGDCRRCFFTNGLPSYLRRKTIAFLPPPLTRRRNFRASAQDGSNVISGGQKGQKEGEGEEDLQLVTAIRSQYNHIAIVDTP SARVLLLDPTHSVHSILQKDQKWSDSYWDEFASLPPIVPEGPISILGLGGGTAAHLMLDLWPSLQLEGWEIDEILIDKARIYFGLSELEKKTPAGGCLHV CIGDALQSTGNDQGKYAGIIVDLFNEGKVLPELEQVSTWLELKRRLMVNGRIMVNCAGIHGSGTSDMVDRRNHLEGKWGEHAVIKAMHEAFPGELSWKRM PDKKGANYLALTGPLPDLSWWSGMVPDELSESVKQWRRACNLEGPTTH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44600			S-adenosyl-L-methionine-depend...		Lus10038404 [exp]	0	1
AT5G39830		DEG8, DEGP8	DEG PROTEASE 8, Trypsin family...		Lus10007262 [exp]	1.0	0.9789
AT5G53850			haloacid dehalogenase-like hyd...		Lus10041928 [exp]	2.2	0.9630
AT3G60370			FKBP-like peptidyl-prolyl cis-...		Lus10042897 [exp]	2.8	0.9764
AT5G16810			Protein kinase superfamily pro...		Lus10040743 [exp]	4.9	0.9624
AT5G44600			S-adenosyl-L-methionine-depend...		Lus10001217 [exp]	4.9	0.9532
AT5G48830			unknown protein		Lus10038165 [exp]	5.1	0.9501
AT3G44890		RP19, RPL9	ribosomal protein L9 (.1)		Lus10041346 [exp]	5.7	0.9707
AT4G38160		PDE191	pigment defective 191, Mitocho...		Lus10013854 [exp]	6.3	0.9640
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10035036 [exp]	7.0	0.9626
AT4G29590			S-adenosyl-L-methionine-depend...		Lus10040550 [exp]	8.8	0.9595

Compare expression of checked genes

Lus10038404 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.