Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35630 2778 / 0 GEM1, MOR1 MICROTUBULE ORGANIZATION 1, ARM repeat superfamily protein (.1) AT3G28155 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001216 [exp] 2588 / 0 AT2G35630 2201 / 0.0 MICROTUBULE ORGANIZATION 1, ARM repeat superfamily protein (.1) Lus10023398 [exp] 604 / 0 AT2G35630 352 / 3e-110 MICROTUBULE ORGANIZATION 1, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G443200 [exp] 3194 / 0 AT2G35630 2869 / 0.0 MICROTUBULE ORGANIZATION 1, ARM repeat superfamily protein (.1) Potri.011G153700 [exp] 3165 / 0 AT2G35630 2928 / 0.0 MICROTUBULE ORGANIZATION 1, ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF12348 [flax] [poplar] CLASP_N CLASP N terminal
Representative CDS sequence Show only first row Show all	>Lus10038405 pacid=23158217 polypeptide=Lus10038405 locus=Lus10038405.g ID=Lus10038405.BGIv1.0 annot-version=v1.0 ATGTCCGAAGAAGAGAAATTGCTCAAGGAGGCAAAGAAGTTGCCATGGGAAGATCGGCTGTTGCACAAGAACTGGAAAGTGCGGAATGAGGCCAACATCG ACTTGGCCGCATTCTGCGATTCCGTCAGAGATCCCAAAGATGCCCGGTTACGAGAATTCGGTCCGTTGTTTAGGAAAACCGTGGCTGATTCAAATGCTCC GGTCCAAGAGAAAGCATTGGATGCGTTGATAGCTTTTTTACGAGCTGCGGATGCTGACGCCGGAAGGTTTGCTAAGGAAGTATGTGATGCAATTTGTGCC AAGTGTCTTACTGGCCGGCCAAAGACAGTAGAGAAAGCACAGGCAGCATTCATGCTTTGGGTAGAGCTGGAGGCTGTTGAAGTATTTCTGGACGCAATGG AGAAGGCAATTAAGAACAAAGTTGCCAAAGCTGTTGTGCCAGCAATTGATGTCATGTTTCAAGCCTTAAGTGAATTTGGCTCTAAAGTTGTTCCACCAAA GCGGATTCTGAAGATGCTGCCAGAATTATTTGATCATCAGGATCAAAATGTAAGGGCTTGCTCAAAAGGACTAACCCTGGAGCTTTGTCGGTGGATTGGC AAAGACCCTGTTAAATCAATATTGCTCGAGAAGATGCGGGATACAATGAAAAAAGAGCTGGAGGCTGAGCTTGTTAACGTTACGGGGACTGCTAAGCCAT CTCGCAAGATCAGATCTGAGCAAGACAAGGAACCAGAGCCTGAAACTGTAGCAGAAGCTGTGGGTCCTAGTCAATCTGAAGAAGCTGCAGATGATGTGCC TCAGGAAAGCGATGGGTATGAGTTTGTTGATCCTGTGGATATTTTGACTCCTCTGGAAAAGTCAGGCTTTTGGGATGGTGTGAAAGCTACCAAATGGTCA GAAAGAAAAGAAGGTGTTGCGGAGCTTACAAAGCTTGCTTCTACAAAGAGGATAGCTCCTGGTGATTTTTCTGAAGTTTGTCGTACATTAAAGAAGCTTA TCACTGATGTGAACATAGCAGTTGGAGTTGAGGCAGTCCAAGCCATTGGAAACCTTGCAAGCGGTCTTAGAACGCATTTCTCTGCAAGTTCTCGATTCCT GTTGCCCGTCTTACTTGAAAAATTGAAAGAGAAAAAACCTACGATGGCCGAGGCTCTCACACAAACCCTGCAAGCAATGCATAAAGCAGGATGCTTAAAT CTTGTTGACATTATTGAAGAGATTAAGACGGCAACAAAGAACAAAGTCCCCCTAGTACGTTCATTAACCTTGAACTGGGTGACATTCTGTATTGAAACTA GCAACAAGGCTGTTGTTTTGAAGGCACATAAGGATTATGTGCCCATTTGTATGGAGTGTCTCAATGATGGTACTCCTGACGTTAGGGATTCAGCATTTGC AGCTTTGGCAGCAATAGCTAAGTCTGTTGGTATGAGGCCATTGGAGAGGTCACTGGAGAAACTTGATGATGTTAGGAAAAAGAAGCTGTCTGAAATGATT TCAGGTTCAAATGCGGGTAACCCAGCTGTTGCAGGCTCAACTGCAACTCAAGCTGCTGGAAGCAGTGTATCTGTCGGAGAGACAGCTGGGGCTTCGCTTG CTAGGAAGTCAGCTGCAAGCATGCTTAGTGGGAGGAGGCCTGCTGCTGCAGCAGCTGCACCGGCCAATAACAAAAAGCCTGGATCTACAAAGGCCGGGAC CAGTAAGAAGGGTGAAGGAGCTGGGCGTTCCGACAGTTCGAGAGTTGAACCACCTGAGGATGTTGAACCTGCAGAAATGGGTCTTGAAGAGATAGAGAGT AGAATAAGTTCTCTTGTGCAAACTGATACTATTACTCTTTTGAAAAGCACTGTGTGGAAAGAGAGGCTTGAAGCAATGTCTTCTTTGAAGCAACAGATAG AGGGAATACAAGATCTTGATAAGTCTGTGGAAATTTTGACACGCTTAGTGTGTGTTCTTCCTGGTTGGAGTGAAAAAAATGTTCAGGTCCAGCAGCAGGT GATTGAAGTTGTCACCCGCCTAGCTTCAACTGCAACAAAATTCCCGAAGAAATGTGTTGTGCTATGCATACTGGGCATTGGTGAGCGGGTAGCTGATATT AAGACTAGAGCTCAAGCCATGAAGTGCCTCACCACTTTCTCGGAAGCTGTTGGTCCAGGATTTGTTTTTGAAAGACTTTACAAAATCATGAAAGAGCACA AGAACCCTAAGGTTCTCAGTGAAGGAATATTGTGGATGGTGTCTGCAGTTGAGGACTTCGGTGTGGCACATGTAAAGCTTAAGGACTTGATTGATTTCTG TAAAGATGTTGGGCTGCAGTCAAGTGTTGCAGCCAGCAGAAACGCTACAATTAAGCTTTTAGGTGTTGTACATAAGTTCGTTGGTCCAGATATCAAGGGT TTTCTTGCTGATGTCAAACCTGCATTGCTTAGTACACTTGATGCAGAATACGAAAAAAATCCTTTTGAGGGTGCTTCTGCAGCACCAAAAAGAACAGTCA AGGCATTGGAATCTTCAGCCTCTGCATCTGCTGGTGGTCTGGATGGCTTACCACGAGAAGACATTAGTGGAAAAATAACACCTGTCCTACTTAAGGGCTT TGAAAGTGCTGATTGGAAGATCCGATTAGAGTCTATCGAAGCTGTAAATAAGATTTTGGAAGAGGCTAATAAGCGCATCCAACCGACTGGAACAGGTGAC CTATTTGGTGCCCTTAGGGGACGTTTATATGACAGCAATAAGAATTTGATCATGACAGCTTTGACAACACTTGGTAGTGTTGCATCAGCTATGGGACCTG CTGTGGAGAAGTCTAGCAAGGGAATTCTCTCCGATATTTTGAAATGCCTCAGTGATAATAAGAAACATATGAGAGAATGTACATTGAATACGCTGGATTC CTGGGTTGCTACTGTTAATCTTGACAAAATGATTCCCTACATTACTACTGCTTTGATAGAAAATAAGCTTGGAGCTGATGGGCGCAAGGATCTCTTTGAT TGGTGTTCAAAACAATTGTCTGGCTTGAGTGATTTTTCTGATGCTGTGCATCTGTTAAAACCAGTTGGTTCTGCAATGACGGACAAGTCTGCAGATGTTC GAAAAGCTTCAGAAGCATGCATCGTTGAGGTTTTGAGAGTCTGTGGAACTGAGACCATTGAGAAGAATCTGAGGGACATTCAGGGGCCAGCATTAGCTCT TATTATGGAACGGATTAGACCTGAAGGTGCATTTCAAGAGTCATTTGACACTGCAAAAACAACCGCCACGGCTTCTAGGGCAAGCACAAAGGTTGGACGA TCAGCAGTTAATGGCTCCTCAAAGCATGGCAACAAAGCTGTTTCTTCCAGAATTGCACCACCTAAGGGCTCGAGGGTAGATCCAGTTTTGGCTGCTCATG ACAGGGCTGTCCAATCTCAAGCATTGTTGAATGTTAAGGACTCAAACAAGGATGAGCGAGAGAGAATTGTAGTCAGAAGGTTTAAGTTTGAAGATCTACG GCTGGAGCAGATTCAAGATCTTGAGGCTGATATGATGAGATATTTCAGAGAGGACTTGCACAAGCGGCTCCTTAGTACAGATTTTAAAAAGCAGGTTGAT GGACTTGATCTGCTACAGAAGGCACTTCCTTCCATAAAGAAAGACGTTATTGAAGTATTGGATATACTGTTGAAGTGGTTTGTTCTGCAGTTTTGCAAGT CTAACACAACATGCATGTTGAAGGTTCTTGAATTCCTACCTGAGCTTTTTGAGATGCTTCAAAACGAAGGATACAATTTAACTGAAGCCGAGGCATCAAT ATTTCTTCCCTGCTTGTCAGAAAAGGTTCTTGAATTCCTACCTGAGCTTTTTGAGATGCTTCAAAACGAAGGATACAATTTAACTGAAGCCGAAGCATCA ATATTTCTTCCCTGCTTATCAGAAAAGTTGGGCCATAATATTGAGAAAGTCAGAGAAAAAATGCGTGAACTTACAAAGCAAATTATTCAAGCATATTCCG CGGCGAAAACTTTCCCATATATTTTAGAGGGTCTGCGTTCAAAAAATAACCGTACTCGCATAGAATGTGCAGACCTGGTTGGGTTCTTAATTGAGCATCA TGGATCTGAGATTGGTGGACAGCTAAAATCCCTCCAAGTTGTTGCAAGCTTGACAGCTGAGCGGGACGGTGAAACTCGAAAAGCTGCTCTGAATGCACTA GCTACTGGATACAAGTTCCTTGGTGAGGACATATGGAGATATGTAGGCAAGCTAACAGATGCTCAAAAGAGTATGCTGGATGATAGGTTTAAGTGGAAGG TTCGTGAGATGGAAAAAAGGAGGGAAGGGCGCCCAGGCGATGCTAGGGCTGCTTTGAAAAGATCTGTTCGGGAAAATGGGGCTGAGATGGCAGAGCAGAG TGGAGAAGTAGCACATGCTATGCCTGCTCCAGCACTTATGAGGAAAAATTATGCCGTTCACGATCAGATGGAGAGACATATGATTCCCTCTGGACTTGGT ACAGCAATTAGCCCATCAGACTGGAATGAAGCTGTTGATGTCATTGCATTAGGTTCTCCAGAGCAGTCCGTTGAAGGAATGAAGGTTGTGTGTCATGAGC TGGCACAGGCCACTGCGGATCCTGAAGGCAGCACGATGGATGAATTGGTGAAGGATGCAGATAGACTAGTTTCATGTTTGGCAAACAAGGTTGCCAAGAC TTTTGATTTCAGTTTGACAGGAGCCTCATCAAGGTCTTGTAAATATGTCCTTAACACCCTCATGCAGACATTTCAGAATAGGAGGCTCGCACATGCTGTT AAGGAAAGCACCCTTGATAGCCTCATAACAGAACTTCTGCTTTGGCTTCTAGATGAGAGGGTTCCTCATATGGATGACGGAAGCCAGCTTCTGAAAGCAT TAAATGTGCTTATGCTTAAAATCCTGGATAATGCAGATCGAACATCATCATTTGTTGTCCTGATTAAGCTCTTGCGCCCCCTGGATCCATCTAGATGGCC GTTGCCTGCATCAACTGAAGCTTTTGCCATCAGGAATCAGAAGTTCTCTGATCTTGTTGTCAAATGCCTTATCAAACTCACAAAGGTTCTTCAGAGCACC ATTTATGATGTAGACCTTGACCGCATTCTTCAAAGCATCCACATATACTTGCAGGAACTGGGAATGGAAGAAATTAGGAAAAGGGCTGGAGCTGACGACA AGCCACTGAGAATGGTGAAAACTGTTCTACATGAACTTGTCAAGCTCCGTGGCGCTGCAATTAAGGGTCACCTTTCTATGGTTCCTATAGACATGAAACC ACAACCAATTATCCTTGCGTACATTGACCTCAACTTGGAGACATTAGCTGCTGCAAGAATGTTAACCTCATCAGGACCAGCTGGTCAAACCCACTGGGGT GATTCTGCTGTCAATAATCCTTCATCTGCCACACACTCTGCTGATGCCCAGTTAAAGCAAGAACTTGCAGCCATATTTAAGAAAATCGGCGATAAACAAA CCTGCACCATTGGTCTTTATGAGTTGTATCGTATTACACAGCTGTATCCCAAGGTTGATATATTTTCTCAGCTTCAAAATGCCAGCGAGGCATTCCGGAC TTATATTAGAGATGGTTTAGCTCAGATGGAGAAAAATGCTGCTGCTGGAAGAACTCCTTCTAGTATGCCAATGTCGACACCACCTCCATCGGTTCTCAAT GCTTCTCCCGACTTCGCCCCTCTCTCCCCTGGTCAAACCAATTCTTTGACCGATGCAAAGTCATTACATGTGAAGTCTGAACCGACGAATTTTCACTTAC CTCCCGCATATTGTGAGGATAGTCGAGGTGTCAACGTTCTCGCTTCGAGAGGTCTCATCTCAGAAAATTCGCTGGGGGACCAAAGAAACGAGAAATTCAT GAGTGGGGTAACCAGTGGGACGTTGGATGCGATAAGAGAGAGGATGAAGAGTATGCAACTAGCTGCCACTGGTGGAAATCCAGATTCCGGTACCACCAGG CCATTAATGTCGATGAACGATAACATAAACAATACCCTTACTTCCCAGGTCCCTCACACTGCAGAACCGGTCGATGCTGGGAATCCTGCACAAGCTGGGA TCCACCCCATGGATGAAAAGGCGCTTTCTGGCCTCCAAGCTCGAATGGAAAGATTGAGAAGTGGTTCTATGGACACTCTGTAG
AA sequence Show only first row Show all	>Lus10038405 pacid=23158217 polypeptide=Lus10038405 locus=Lus10038405.g ID=Lus10038405.BGIv1.0 annot-version=v1.0 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAAFCDSVRDPKDARLREFGPLFRKTVADSNAPVQEKALDALIAFLRAADADAGRFAKEVCDAICA KCLTGRPKTVEKAQAAFMLWVELEAVEVFLDAMEKAIKNKVAKAVVPAIDVMFQALSEFGSKVVPPKRILKMLPELFDHQDQNVRACSKGLTLELCRWIG KDPVKSILLEKMRDTMKKELEAELVNVTGTAKPSRKIRSEQDKEPEPETVAEAVGPSQSEEAADDVPQESDGYEFVDPVDILTPLEKSGFWDGVKATKWS ERKEGVAELTKLASTKRIAPGDFSEVCRTLKKLITDVNIAVGVEAVQAIGNLASGLRTHFSASSRFLLPVLLEKLKEKKPTMAEALTQTLQAMHKAGCLN LVDIIEEIKTATKNKVPLVRSLTLNWVTFCIETSNKAVVLKAHKDYVPICMECLNDGTPDVRDSAFAALAAIAKSVGMRPLERSLEKLDDVRKKKLSEMI SGSNAGNPAVAGSTATQAAGSSVSVGETAGASLARKSAASMLSGRRPAAAAAAPANNKKPGSTKAGTSKKGEGAGRSDSSRVEPPEDVEPAEMGLEEIES RISSLVQTDTITLLKSTVWKERLEAMSSLKQQIEGIQDLDKSVEILTRLVCVLPGWSEKNVQVQQQVIEVVTRLASTATKFPKKCVVLCILGIGERVADI KTRAQAMKCLTTFSEAVGPGFVFERLYKIMKEHKNPKVLSEGILWMVSAVEDFGVAHVKLKDLIDFCKDVGLQSSVAASRNATIKLLGVVHKFVGPDIKG FLADVKPALLSTLDAEYEKNPFEGASAAPKRTVKALESSASASAGGLDGLPREDISGKITPVLLKGFESADWKIRLESIEAVNKILEEANKRIQPTGTGD LFGALRGRLYDSNKNLIMTALTTLGSVASAMGPAVEKSSKGILSDILKCLSDNKKHMRECTLNTLDSWVATVNLDKMIPYITTALIENKLGADGRKDLFD WCSKQLSGLSDFSDAVHLLKPVGSAMTDKSADVRKASEACIVEVLRVCGTETIEKNLRDIQGPALALIMERIRPEGAFQESFDTAKTTATASRASTKVGR SAVNGSSKHGNKAVSSRIAPPKGSRVDPVLAAHDRAVQSQALLNVKDSNKDERERIVVRRFKFEDLRLEQIQDLEADMMRYFREDLHKRLLSTDFKKQVD GLDLLQKALPSIKKDVIEVLDILLKWFVLQFCKSNTTCMLKVLEFLPELFEMLQNEGYNLTEAEASIFLPCLSEKVLEFLPELFEMLQNEGYNLTEAEAS IFLPCLSEKLGHNIEKVREKMRELTKQIIQAYSAAKTFPYILEGLRSKNNRTRIECADLVGFLIEHHGSEIGGQLKSLQVVASLTAERDGETRKAALNAL ATGYKFLGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKRREGRPGDARAALKRSVRENGAEMAEQSGEVAHAMPAPALMRKNYAVHDQMERHMIPSGLG TAISPSDWNEAVDVIALGSPEQSVEGMKVVCHELAQATADPEGSTMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNRRLAHAV KESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLIKLLRPLDPSRWPLPASTEAFAIRNQKFSDLVVKCLIKLTKVLQST IYDVDLDRILQSIHIYLQELGMEEIRKRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLNLETLAAARMLTSSGPAGQTHWG DSAVNNPSSATHSADAQLKQELAAIFKKIGDKQTCTIGLYELYRITQLYPKVDIFSQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSMPMSTPPPSVLN ASPDFAPLSPGQTNSLTDAKSLHVKSEPTNFHLPPAYCEDSRGVNVLASRGLISENSLGDQRNEKFMSGVTSGTLDAIRERMKSMQLAATGGNPDSGTTR PLMSMNDNINNTLTSQVPHTAEPVDAGNPAQAGIHPMDEKALSGLQARMERLRSGSMDTL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Lus10038405 [exp]	0	1
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Lus10009803 [exp]	2.0	0.9684
AT4G39420			unknown protein		Lus10005786 [exp]	2.0	0.9618
AT4G03550		ATGSL5, PMR4, G...	POWDERY MILDEW RESISTANT 4, gl...		Lus10031648 [exp]	2.2	0.9555
AT5G07740			actin binding (.1)		Lus10003482 [exp]	4.2	0.9367
AT4G24610			unknown protein		Lus10000766 [exp]	4.6	0.9537
AT5G11700			unknown protein		Lus10007461 [exp]	5.0	0.9314
AT4G39420			unknown protein		Lus10030711 [exp]	5.7	0.9398
AT2G45540			WD-40 repeat family protein / ...		Lus10015857 [exp]	6.0	0.9591
AT5G24710			Transducin/WD40 repeat-like su...		Lus10028092 [exp]	6.3	0.9574
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Lus10040481 [exp]	6.9	0.9511

Compare expression of checked genes

Lus10038405 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.