Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023397 [exp] 87 / 4e-23 AT5G50360 65 / 2e-13 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G091900 [exp] 43 / 2e-05 AT5G50360 221 / 8e-71 unknown protein Potri.012G094400 [exp] 39 / 0.0003 AT5G50360 233 / 3e-75 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038406 pacid=23158320 polypeptide=Lus10038406 locus=Lus10038406.g ID=Lus10038406.BGIv1.0 annot-version=v1.0 ATGATGGATGAAGGTAGAGGAGGAGGAGGCGCGTGTTGTATAGCCAAGTACGGCGGAGGAGGAGGATACGGCGAGTACGTGGACGTCTCTAAGATGCATC GTGTTATGCTTCGGTTCCGACCCATAGCACCCAAGCCCAGTACAGCAGCTGGATCGTCCTCTTCTTCTGGTGGGTCCGACCCCGACGTCACCTCCAAACC TGCTCCTCGCCGCGGGAGGAAGCGGCCGAGGAAGGCGGCGAAGGGAATGACGTCGCTAGTGAAATCGGAAGAAAGGATAGTATTGACGACTCTTCCGCTT TTTCCGGAGTCTCCCGACGGCTGCGGTTGTAGTCACGGTAACGGTGGCGGCGCCGCCTTGTGA
AA sequence Show only first row Show all	>Lus10038406 pacid=23158320 polypeptide=Lus10038406 locus=Lus10038406.g ID=Lus10038406.BGIv1.0 annot-version=v1.0 MMDEGRGGGGACCIAKYGGGGGYGEYVDVSKMHRVMLRFRPIAPKPSTAAGSSSSSGGSDPDVTSKPAPRRGRKRPRKAAKGMTSLVKSEERIVLTTLPL FPESPDGCGCSHGNGGGAAL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50360			unknown protein		Lus10038406 [exp]	0	1
AT1G52690		LEA7	LATE EMBRYOGENESIS ABUNDANT 7,...		Lus10013489 [exp]	2.4	0.8645
AT4G27310	CO		B-box type zinc finger family ...		Lus10031593 [exp]	6.3	0.8179
AT5G51910	TCP	TCP19	TCP family transcription facto...		Lus10002963 [exp]	9.8	0.7524
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10032041 [exp]	16.4	0.7675
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Lus10034499 [exp]	18.7	0.8051
AT3G22970			Protein of unknown function (D...		Lus10003087 [exp]	26.0	0.7935
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10007905 [exp]	27.0	0.8135
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10004182 [exp]	31.1	0.7274
AT5G16200			50S ribosomal protein-related ...		Lus10028496 [exp]	32.4	0.7974
AT5G01210			HXXXD-type acyl-transferase fa...		Lus10027778 [exp]	33.1	0.7978

Compare expression of checked genes

Lus10038406 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.