Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44560 286 / 3e-98 VPS2.2 SNF7 family protein (.1.2) AT1G03950 239 / 4e-80 VPS2.3 vacuolar protein sorting-associated protein 2.3 (.1) AT2G06530 116 / 7e-32 VPS2.1 SNF7 family protein (.1) AT5G22950 43 / 7e-05 VPS24.1 SNF7 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023396 [exp] 280 / 3e-95 AT5G44560 270 / 2e-91 SNF7 family protein (.1.2) Lus10033914 [exp] 207 / 2e-67 AT1G03950 278 / 5e-96 vacuolar protein sorting-associated protein 2.3 (.1) Lus10015642 [exp] 115 / 4e-31 AT2G06530 338 / 1e-118 SNF7 family protein (.1) Lus10037660 [exp] 114 / 5e-31 AT2G06530 358 / 6e-127 SNF7 family protein (.1) Lus10017166 [exp] 108 / 8e-29 AT2G06530 357 / 2e-126 SNF7 family protein (.1) Lus10003538 [exp] 84 / 6e-21 AT1G03950 121 / 3e-36 vacuolar protein sorting-associated protein 2.3 (.1) Lus10021561 [exp] 68 / 5e-14 AT2G06530 194 / 1e-63 SNF7 family protein (.1) Lus10021562 [exp] 42 / 4e-05 AT2G06530 134 / 3e-41 SNF7 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G154700 [exp] 317 / 1e-110 AT5G44560 331 / 1e-116 SNF7 family protein (.1.2) Potri.001G442500 [exp] 308 / 4e-107 AT5G44560 328 / 3e-115 SNF7 family protein (.1.2) Potri.005G227000 [exp] 246 / 6e-83 AT1G03950 309 / 3e-108 vacuolar protein sorting-associated protein 2.3 (.1) Potri.002G035900 [exp] 244 / 4e-82 AT1G03950 308 / 8e-108 vacuolar protein sorting-associated protein 2.3 (.1) Potri.001G170400 [exp] 117 / 5e-32 AT2G06530 326 / 2e-114 SNF7 family protein (.1) Potri.018G065100 [exp] 107 / 2e-28 AT2G06530 332 / 9e-117 SNF7 family protein (.1) Potri.006G144300 [exp] 40 / 0.0002 AT2G06530 62 / 7e-13 SNF7 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0235 [flax] [poplar] PspA PF03357 [flax] [poplar] Snf7 Snf7
Representative CDS sequence Show only first row Show all	>Lus10038407 pacid=23158186 polypeptide=Lus10038407 locus=Lus10038407.g ID=Lus10038407.BGIv1.0 annot-version=v1.0 ATGAACTTCTTCAAGAAGAAAACCTCTCCCAAAGGTACTCTCGCTTCCTCTGCAACTTCATTCTTCCTTTCCCCTCTACAAATTTATTCATGGTTTCTCA CCGTCGTTTCAACAGAAGCTCTAAGGAGCAGCAAGAGAGATATGGCGGTCGCCACCAGAGGTATTGAACGGGAAATAGCGTCTCTTCAGATGGAGGAAAG GAAATTGGTGGCAGAGATCAAGAAAGAAGCCAAAACCGGAAACGAGGCAAGTTCCTCTTTCTCCATTTTGATTGGAAAGCTCAGGCAGCAGATAACGAAT TTGCAAGGGAGTCGTGCTCAGATCAGAGGAGTTGCTACTCATACACAGGCTCTATATGCCAACACTTCGATTTCTACTGGGATGAAAGGTGCAACTAAGG CCATGGTCGCTATGAACAAGCAAATGGCTCCTGAAAAACAAGCTAAAGTGATCAGAGAATTCCAGAAGCAGTCATCACAATTGGATATGACGATTGAAAT GATGTCGGAATCTATTGACGAAACCCTGGACAAAGACGAAGCGGAAGAGGAAACAGAGGAGCTTACTAACCAGGTCCTTGATGAGATTGGTGTAGATATT GCATCTCAGTTATCTTCAGCTCCCAAAGGACGCATTGCATCAAAGAGTGCACCTAATGCCGTTACCAGCACCGAGTCTGCCAATGTCGAGGAACTTGAGA AAAGGTTGGCCTCTCTACGGCGAATCTGA
AA sequence Show only first row Show all	>Lus10038407 pacid=23158186 polypeptide=Lus10038407 locus=Lus10038407.g ID=Lus10038407.BGIv1.0 annot-version=v1.0 MNFFKKKTSPKGTLASSATSFFLSPLQIYSWFLTVVSTEALRSSKRDMAVATRGIEREIASLQMEERKLVAEIKKEAKTGNEASSSFSILIGKLRQQITN LQGSRAQIRGVATHTQALYANTSISTGMKGATKAMVAMNKQMAPEKQAKVIREFQKQSSQLDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDI ASQLSSAPKGRIASKSAPNAVTSTESANVEELEKRLASLRRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44560		VPS2.2	SNF7 family protein (.1.2)		Lus10038407 [exp]	0	1
AT4G17760			damaged DNA binding;exodeoxyri...		Lus10030971 [exp]	1.7	0.8498
AT5G05080		ATUBC22, UBC22	ubiquitin-conjugating enzyme 2...		Lus10038982 [exp]	5.7	0.8328
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10008854 [exp]	6.3	0.8213
AT3G48425			DNAse I-like superfamily prote...		Lus10019483 [exp]	6.5	0.8080
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10008855 [exp]	7.2	0.8361
AT1G32730			unknown protein		Lus10001085 [exp]	12.5	0.7952
AT2G47580		U1A	spliceosomal protein U1A (.1)		Lus10003358 [exp]	13.8	0.8171
AT3G27390			unknown protein		Lus10014881 [exp]	15.1	0.7872
AT3G44750		HDT1, HDA3, ATH...	HISTONE DEACETYLASE 2A, histon...		Lus10003376 [exp]	17.7	0.8062
AT4G23860			PHD finger protein-related (.1...		Lus10023084 [exp]	18.8	0.8072

Compare expression of checked genes

Lus10038407 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.