Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11720 1149 / 0 Glycosyl hydrolases family 31 protein (.1) AT1G68560 807 / 0 AXY3, TRG1, XYL1, ATXYL1 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) AT3G45940 776 / 0 Glycosyl hydrolases family 31 protein (.1) AT5G63840 324 / 2e-96 PSL5, RSW3 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) AT3G23640 308 / 4e-90 HGL1 heteroglycan glucosidase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008067 [exp] 1047 / 0 AT5G11720 1072 / 0.0 Glycosyl hydrolases family 31 protein (.1) Lus10034315 [exp] 809 / 0 AT1G68560 1454 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10041457 [exp] 798 / 0 AT1G68560 1455 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10035019 [exp] 778 / 0 AT1G68560 1195 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10035020 [exp] 763 / 0 AT1G68560 1238 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10000779 [exp] 443 / 1e-148 AT5G11720 473 / 1e-160 Glycosyl hydrolases family 31 protein (.1) Lus10033490 [exp] 294 / 1e-85 AT5G63840 1444 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Lus10020887 [exp] 280 / 2e-80 AT5G63840 1435 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Lus10035671 [exp] 239 / 4e-66 AT3G23640 1456 / 0.0 heteroglycan glucosidase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G154500 [exp] 1254 / 0 AT5G11720 1215 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.011G154300 [exp] 1214 / 0 AT5G11720 1194 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.011G154200 [exp] 1197 / 0 AT5G11720 1189 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.001G442800 [exp] 1194 / 0 AT5G11720 1167 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.008G120000 [exp] 813 / 0 AT1G68560 1465 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Potri.010G125800 [exp] 805 / 0 AT1G68560 1422 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Potri.007G100000 [exp] 309 / 6e-91 AT5G63840 1427 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Potri.005G069000 [exp] 294 / 1e-85 AT5G63840 1405 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Potri.001G129600 [exp] 293 / 2e-84 AT3G23640 1463 / 0.0 heteroglycan glucosidase 1 (.1.2) Potri.006G039500 [exp] 83 / 6e-16 AT5G63840 74 / 3e-13 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01055 [flax] [poplar] Glyco_hydro_31 Glycosyl hydrolases family 31
Representative CDS sequence Show only first row Show all	>Lus10038408 pacid=23158120 polypeptide=Lus10038408 locus=Lus10038408.g ID=Lus10038408.BGIv1.0 annot-version=v1.0 ATGGAGAAGAAGAACGAGAAAGGGAAGCTGAACCTTCTCCATCTTCTTATATTCTGTGTTCTTTTGTTCTGCTCATTACTACACCCATCGAACGGTGAGC AAGCCGACACAGTTGGCTATGGTTACAGAGTTGTATCAGCCGGGATTGATCCTTCCGACGGCAACAACTTCGTCGCCGACCTGAAGCTTATTAACGAGTC TTCAGTTTTCGGGCCGGACATTGACAGTCTTGCTCTCATTGTTAGCTTTGAGACGGAGGATCGCCTGCGGATCCGAATCACAGATTCCCAACACCAGAGA TGGGAAGTCCCTCAAGAGATAATTCCACGTCCAAACAACAACACCACCTTTGCCCTGAATCCAACACTGACCCGCCACGATTCAGAACAGCAGCAAGCTC TTGTCTTCTCGCTCCCCAACTCCGATTTAGCCTTCACTCTCTTCAACGCCACTCCATTCGGATTCACCGTCTCTCGTCGCCCCTTCGGCGACGCCGTTTT GGACGCCAACCCTGACCCTTCTGATTCGGAGACGTTTCTGGTCTTCAAGGACCAATACATCCAACTATCCTCTGCACTTCCTGAAGGAAGGTCCTCTCTT TATGGCCTGGGAGAGCACACGAAGAAGTCATTCAAGCTGGTGCCTAATGAAACGCTCACAATGTGGAATGCTGACATTGGCAGTGCCACTCCTGATGTCA ATCTATATGGGTCTCACCCCTTTTACATGGACGTCCGATCAGCATCGCCGGATGGGAAAGTAAAAGCTGGTACGAGTCATGGAGTTTTAATGCTGAATAG TAACGGCATGGATGTAGAGTACGGTGGTAATAGAATAACTTATAAGATGATCGGTGGAATTATTGATCTGTACATCTTCGCTGGGCCAACTCCTAAATTG GTGATGGAGCAGTACACGGAGCTTATTGGCAGGCCGGCTCCAATGCCTTACTGGTCTTTTGGGTTTCATCAGTGCCGATGGGGTTACAGAAACGTTTCTG ATGTCAAATCGGTAGTTAATGGTTATGCAAAAGCTGGTATACCTCTGGAAGTTATGTGGACGGATATCGATTACATGGATGGTTACAAGGATTTCACCCT TGATCCCATCAATTTCCCTCCGGCGGAGATGAATACCTTTCTTGCGAATCTACACCAAAATGGTCAGAAGTATGTCCTTATTTTGGACCCTGGTATTAGT ATAAACTCATCATATGCAACTTTCACAAGAGGAACGGAGGCTGACATTTTTATCAAATACAATGGGAGTCCTTACGAGGGTGTGGTTTGGCCCGGATCAG TCTACTTTCCTGATTTTCTCAATACGATGACTGCGGAATTTTGGGGGAACGAGATTGAAATGTTCCACAATGTTGTTCCTTTTGATGGTCTCTGGCTTGA CATGAATGAAGCCTCAAATTTCAATACTACTTCTCCCATTCAACCCTCACCCTTCGATGACCCTCCGTACAAGATCAATGATTCTGGAGTGAGACGATCC ATTGGCAACAAGACACTGCCTCCAACATCTACCCATCATGGCGAAGTTGCTGAGTATAATGTTCATAACTTGTATGGAATGTTGGAATCCAAAGTCACCA ATACAGCTTTGGTTAATGTGACTCGAAAACGGCCCTTCATACTTTCTAGATCAACTTTCGTTGGTTCTGGGAAGTACACAGCTCATTGGACTGGTGACAA TGCTGCAACGTGGGATGATTTGGCTTACTCGATTCCATCAATTCTCAACTTTGGACTATTTGGAGTCCCAATGGTTGGTGCAGATATCTGTGGTTTCTCT CAGAACACAACTGAAGAACTCTGTCGTCGTTGGATTCAGCTCGGAGCGTTTTACCCTTTCGCAAGAGACCATTCTGCAAAAGACACAACTCGTCAAGAGC TCTACCTCTGGGATTCCGTAGCTGCAACAGCCAAGAAAGTACTCGGCATGCGTTACCAGTTGCTTCCTCACTTTTACAGCCTTATGCACGAAGCACACAC TGAAGGAACTCCCATAGCACGCCCACTCTTCTTCTCCTTCCCCGAAGACATCCAAACGTACGAGATCAGCTCGCAGTTCCTACTCGGCAAAGGCATAATG GTGAGCCCTGCACTGAAACCTGGCACTGTCTCAGTCGACGCCTACTTCCCAAAAGGGAACTGGTTCGACATCTTCAACGTCTCGAATTCCGTAAGTGTAA CGGAGAAGGGAGAGTACATAAACCTCCCTGCTCCGGCGGACCACATAAACGTCCACGTTCATGAAGGGAACATTCTGGCCATGCAAGGAGAAGCCATGAC GACAATAGAAGCTCGAGACACACCGTTCCATCTCCTCGTTGTAGTTGGCCACGGTGACAACAGTAGCAGCTCCGGACAAGTTTTCTTGGACGACGGAGAG AGCGTGGAGATGGGCGGTGGTGAGGGAAAGAAGTGGAGCTTGGTGAAGTTTGATGGTGAAAGATTTGGAGACACAGTGACTATTACATCGACAGTTCTGA AAGGGGAGTTTGCACTGATTCGAAAATGGGTTATAAGCAAGGTAACGATATTAGGAATGGAGAAGAAATATAATGGGACGTATGTGGAAGGGTTAAATTT ACCTTCTGGTGTTGAGACAAGCTTCATCAATGGTGTTGGGAAGTTTGGTGTGTTTGAGATCTCTGGTCTGTCTATTCAGATTGGACAAGAATTCAAGTTG AAGATCAGGTTTCGAAGCCAACTTTGA
AA sequence Show only first row Show all	>Lus10038408 pacid=23158120 polypeptide=Lus10038408 locus=Lus10038408.g ID=Lus10038408.BGIv1.0 annot-version=v1.0 MEKKNEKGKLNLLHLLIFCVLLFCSLLHPSNGEQADTVGYGYRVVSAGIDPSDGNNFVADLKLINESSVFGPDIDSLALIVSFETEDRLRIRITDSQHQR WEVPQEIIPRPNNNTTFALNPTLTRHDSEQQQALVFSLPNSDLAFTLFNATPFGFTVSRRPFGDAVLDANPDPSDSETFLVFKDQYIQLSSALPEGRSSL YGLGEHTKKSFKLVPNETLTMWNADIGSATPDVNLYGSHPFYMDVRSASPDGKVKAGTSHGVLMLNSNGMDVEYGGNRITYKMIGGIIDLYIFAGPTPKL VMEQYTELIGRPAPMPYWSFGFHQCRWGYRNVSDVKSVVNGYAKAGIPLEVMWTDIDYMDGYKDFTLDPINFPPAEMNTFLANLHQNGQKYVLILDPGIS INSSYATFTRGTEADIFIKYNGSPYEGVVWPGSVYFPDFLNTMTAEFWGNEIEMFHNVVPFDGLWLDMNEASNFNTTSPIQPSPFDDPPYKINDSGVRRS IGNKTLPPTSTHHGEVAEYNVHNLYGMLESKVTNTALVNVTRKRPFILSRSTFVGSGKYTAHWTGDNAATWDDLAYSIPSILNFGLFGVPMVGADICGFS QNTTEELCRRWIQLGAFYPFARDHSAKDTTRQELYLWDSVAATAKKVLGMRYQLLPHFYSLMHEAHTEGTPIARPLFFSFPEDIQTYEISSQFLLGKGIM VSPALKPGTVSVDAYFPKGNWFDIFNVSNSVSVTEKGEYINLPAPADHINVHVHEGNILAMQGEAMTTIEARDTPFHLLVVVGHGDNSSSSGQVFLDDGE SVEMGGGEGKKWSLVKFDGERFGDTVTITSTVLKGEFALIRKWVISKVTILGMEKKYNGTYVEGLNLPSGVETSFINGVGKFGVFEISGLSIQIGQEFKL KIRFRSQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11720			Glycosyl hydrolases family 31 ...		Lus10038408 [exp]	0	1
AT5G25500			unknown protein		Lus10002031 [exp]	14.1	0.7238
AT2G40330		RCAR9, PYL6	regulatory components of ABA r...		Lus10029222 [exp]	20.8	0.7194
AT2G40330		RCAR9, PYL6	regulatory components of ABA r...		Lus10007275 [exp]	23.1	0.7160
AT4G39520			GTP-binding protein-related (....		Lus10006801 [exp]	24.9	0.7078
AT2G20940			Protein of unknown function (D...		Lus10034474 [exp]	28.9	0.6830
AT1G15230			unknown protein		Lus10035871 [exp]	29.0	0.6990
AT3G58900			F-box/RNI-like superfamily pro...		Lus10035564 [exp]	30.5	0.6943
AT1G51410			NAD(P)-binding Rossmann-fold s...		Lus10009955 [exp]	32.0	0.5791
AT5G07330			unknown protein		Lus10018040 [exp]	40.5	0.7070
AT4G26780		MGE2, AR192	mitochondrial GrpE 2, Co-chape...		Lus10043180 [exp]	41.3	0.6747

Compare expression of checked genes

Lus10038408 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.