Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20380 178 / 3e-55 LSD1 LESION SIMULATING DISEASE, LSD1 zinc finger family protein (.1.2.3.4.5.6.7.8) AT1G32540 173 / 4e-53 LOL1 lsd one like 1 (.1.2.3) AT4G21610 92 / 3e-22 LOL2 lsd one like 2 (.1) AT4G19490 97 / 4e-22 ATVPS54 ARABIDOPSIS THALIANA VPS54 HOMOLOG, VPS54 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023392 [exp] 285 / 4e-97 AT4G20380 210 / 6e-70 LESION SIMULATING DISEASE, LSD1 zinc finger family protein (.1.2.3.4.5.6.7.8) Lus10008066 [exp] 231 / 4e-75 AT4G20380 212 / 6e-70 LESION SIMULATING DISEASE, LSD1 zinc finger family protein (.1.2.3.4.5.6.7.8) Lus10040081 [exp] 176 / 2e-53 AT1G32540 227 / 3e-76 lsd one like 1 (.1.2.3) Lus10030969 [exp] 171 / 1e-52 AT1G32540 236 / 5e-81 lsd one like 1 (.1.2.3) Lus10035361 [exp] 171 / 1e-52 AT1G32540 233 / 5e-80 lsd one like 1 (.1.2.3) Lus10000782 [exp] 154 / 1e-46 AT4G20380 160 / 4e-51 LESION SIMULATING DISEASE, LSD1 zinc finger family protein (.1.2.3.4.5.6.7.8) Lus10023394 [exp] 159 / 3e-43 AT4G19490 1179 / 0.0 ARABIDOPSIS THALIANA VPS54 HOMOLOG, VPS54 (.1.2) Lus10038410 [exp] 156 / 5e-42 AT4G19490 1263 / 0.0 ARABIDOPSIS THALIANA VPS54 HOMOLOG, VPS54 (.1.2) Lus10020766 [exp] 89 / 4e-21 AT4G21610 133 / 3e-40 lsd one like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G154800 [exp] 215 / 1e-69 AT4G20380 205 / 5e-68 LESION SIMULATING DISEASE, LSD1 zinc finger family protein (.1.2.3.4.5.6.7.8) Potri.001G442400 [exp] 207 / 1e-66 AT4G20380 195 / 3e-64 LESION SIMULATING DISEASE, LSD1 zinc finger family protein (.1.2.3.4.5.6.7.8) Potri.003G090300 [exp] 171 / 9e-53 AT1G32540 194 / 1e-64 lsd one like 1 (.1.2.3) Potri.001G143900 [exp] 169 / 6e-52 AT1G32540 189 / 9e-63 lsd one like 1 (.1.2.3) Potri.011G154000 [exp] 112 / 3e-27 AT4G19490 1174 / 0.0 ARABIDOPSIS THALIANA VPS54 HOMOLOG, VPS54 (.1.2) Potri.001G442900 [exp] 103 / 4e-24 AT4G19490 1144 / 0.0 ARABIDOPSIS THALIANA VPS54 HOMOLOG, VPS54 (.1.2) Potri.004G043100 [exp] 78 / 2e-17 AT4G21610 131 / 7e-40 lsd one like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06943 [flax] [poplar] zf-LSD1 LSD1 zinc finger
Representative CDS sequence Show only first row Show all	>Lus10038409 pacid=23158390 polypeptide=Lus10038409 locus=Lus10038409.g ID=Lus10038409.BGIv1.0 annot-version=v1.0 ATGAGAGAAAGGTTGTTTGTACATCTTCGGGGGTTGCCTCAAATTGTTGAGAGCTGGAACAGACCAGAAGAATCAGACCCACAGCATAGTCAGTTTGCTC GATCTCTTACCAGGGTAACGACCATTTCTGACCATAGTATCGATCGAGTATTAAGTTTATTGGGTGAAACGACTGATTTTTGCTTGGCCTCCCCCCTCTT GCTTGCAATCAATGTATATCCCGATCGTGCATTCACTGTTTGTTGCAGCTTTCAGGAGGTTGGCTATCTACAACGTGTTCTGTCAAGAACTTTGCATGAG TCTGATGTTAAAGCGATTTTTCGGCAAGTTGTTGTAATCTTCCACTCCCAAATTTCTGAGGCATTTTCACGGCTAGATATTAGCACTCCACAAGCCAAGG ACAGAAATTCTCCGATCTCTGCAATTCTCACCCGTCGCGTCCTCCCTCTCCAGATTCAAACATTGTTTTCTCCGGCCACCGCCATCACCGTTGTCATCCT TTGCTGCGGTGATACCTTCGTTTTCCTTGATTTCCTTCTCGCTCTTATCTTCCTATTTTGCATGCAGAGTCAGTTAGTTTGTAGTGGATGTAGGAGCGTT CTTCTTTATCCAAGAGGAGCTTCCAACGTTTGCTGCGCGTTATGTAATACACTCACAGCTGTACCTGCTCCTGGGTTGGAATTGGCCCAAATTATATGTG GAGGTTGCAGGACATTGCTAATGTATACACGTGGAGCAACAAGTGTCAGATGTTCTTGTTGTCACACTGTCAACCTTGCACCAGTATCTAGTCAGATTGC TCACATAAACTGTGGAAATTGCCGGACAATGCTTATGTATCCTGAGGGAGCTCCATCTGTGAAGTGTGCAGTCTGTCACTATGTTACTGATGCCGGCATG GGGAATGTCAGGGTTCAACCGCCAGTGAATAGACCAAACAGTGCAGGTTCTGCAGTATCATACACTGCCTCAGTAAGCAATGTGGTGGTTGGAGTCACCA CAGATAAGAAGTAA
AA sequence Show only first row Show all	>Lus10038409 pacid=23158390 polypeptide=Lus10038409 locus=Lus10038409.g ID=Lus10038409.BGIv1.0 annot-version=v1.0 MRERLFVHLRGLPQIVESWNRPEESDPQHSQFARSLTRVTTISDHSIDRVLSLLGETTDFCLASPLLLAINVYPDRAFTVCCSFQEVGYLQRVLSRTLHE SDVKAIFRQVVVIFHSQISEAFSRLDISTPQAKDRNSPISAILTRRVLPLQIQTLFSPATAITVVILCCGDTFVFLDFLLALIFLFCMQSQLVCSGCRSV LLYPRGASNVCCALCNTLTAVPAPGLELAQIICGGCRTLLMYTRGATSVRCSCCHTVNLAPVSSQIAHINCGNCRTMLMYPEGAPSVKCAVCHYVTDAGM GNVRVQPPVNRPNSAGSAVSYTASVSNVVVGVTTDKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32540		LOL1	lsd one like 1 (.1.2.3)		Lus10038409 [exp]	0	1
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Lus10029591 [exp]	5.9	0.8705
AT1G55840			Sec14p-like phosphatidylinosit...		Lus10032587 [exp]	6.0	0.8457
AT1G15130			Endosomal targeting BRO1-like ...		Lus10035265 [exp]	7.7	0.8600
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10007952 [exp]	8.8	0.8314
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Lus10005191 [exp]	15.5	0.8288
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10013486 [exp]	15.9	0.8271
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10026741 [exp]	20.6	0.8204
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10035827 [exp]	21.5	0.8420
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10036609 [exp]	26.1	0.8410
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Lus10040807 [exp]	28.6	0.8316

Compare expression of checked genes

Lus10038409 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.