Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19490 1179 / 0 ATVPS54 ARABIDOPSIS THALIANA VPS54 HOMOLOG, VPS54 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023394 [exp] 1550 / 0 AT4G19490 1179 / 0.0 ARABIDOPSIS THALIANA VPS54 HOMOLOG, VPS54 (.1.2) Lus10023393 [exp] 525 / 9e-178 AT4G19490 490 / 3e-165 ARABIDOPSIS THALIANA VPS54 HOMOLOG, VPS54 (.1.2) Lus10038409 [exp] 156 / 2e-41 AT1G32540 179 / 2e-55 lsd one like 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G154000 [exp] 1299 / 0 AT4G19490 1174 / 0.0 ARABIDOPSIS THALIANA VPS54 HOMOLOG, VPS54 (.1.2) Potri.001G442900 [exp] 1261 / 0 AT4G19490 1144 / 0.0 ARABIDOPSIS THALIANA VPS54 HOMOLOG, VPS54 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07928 [flax] [poplar] Vps54 Vps54-like protein
Representative CDS sequence Show only first row Show all	>Lus10038410 pacid=23158417 polypeptide=Lus10038410 locus=Lus10038410.g ID=Lus10038410.BGIv1.0 annot-version=v1.0 ATGGATTCGCAGCCTTCCCTTACGGGAAGGTCATTGGTTGACTCCACGGCCACAACTTCGTCTTCCTCCGCCGTCCCATCGTCTTTTGCCATTAGCAGGG CCAATTCGTCACTGGCTAAATCACTGTCCGATGCTAGCAGCCAGAGCCTTTCTTCGATCCTCAACAATCCGCACGTCGGCAAGTCCGGTGTTTACGGCTC CGATGCGACATGGGTGGGGTGGTGGTCCTCCTCGACTGCCGTGGCTCCGCCGGAATTTGCACCGTTGATCTCCACCAAGGCGGTGTCTGACGTGTCGAGA TCCGATTTCCAGAGCTACCTGTCTTCCATCTCTGAGTTCTATAACCGATTTGAGGACATCAGGAATCACACCACGAAGGAAGAGACTCTTAAGTTGGAGA GCATCGGGGGACAGGGTGAGGCGCTTGTTGCTTGTTTAAGGGAGGTTCCTGCGTTGTACTTTAAAGAGGATTTCGCTTTGGAGGACGGGGGAACTTTCCG GGCTGCCTGCCCTTTCTCCAACGTCTCGGAGAATTTAATGTTGCAGGAGAAGCTGTCGCATTACTTGGACGTGGTGGAACTTCACTTGGTGAAGGAGATA TCTTTGCGGTCTAACTCCTTCTTTGAGGCGCAGGGAGAGTTACAGGATCTTAATGTCAGGATAGTGGAAGGGTGTAGTCGGATTCGGGAGTTGAAGGAGA CCATAAAACTTCTGGACAAGGATTTGGTTGAGTCAGCGAGGGAACTTCAGGATTTGAATGGCACCAGGGGAAATTTGTTGGCTTTGCAGCAAAAGTTGAG ACTTATATTATATGTTAACCAGGCTCTTTCCGCACTTAAATTTGTTATTCTTGTTATGCTTGTTACCACATTTCTGATATTCAGTAGAATGAATTGTGTG TACTGTTTATTGGTTGCGGCAATGTTCATTAGTGTTGCACTACTTGATCTTGAGTGGCACAAAGTTCTGTCTGGTAATCTTGTTGACTGTCAGAAGTTTA ATGTTTGCCATGCTCTCTGTGTGCAGCTTGTTGCCTCGGGAGATTGTGCTGGCGCTTTGGATGTCACTGAAGATTTGCAGCATTTGCTGGATGGAGATGA ACTAACTGGTCTACATTGTTTTCGACACCTGCGCGATCATGTGACTACTTCAGTAGATTCTGTGAACAGTATTCTTTCTACTGAGTTCTTGCGTGCTTCA ATACATGACACTGGGGAGACAGATGTGATTATTTTGTCTAAAGCAAAATCTAGGGCTGCAAATCTGACAAATGGTAGAGTTGAAGAGGTCAAGTTGGATG ATGAATATACTGCTAATTTTCGAGAGCGGCTTCTACCCATTGTTGTTTGTCTGCTGAGGACTGCTAAGCTTCCATCAATTTTGAGGATATACCGTGACAC CTTGACTGCGGACATGAAAAGTGCCATTAAGAATGCAGTTGCTGAGCTTCTTCCAATTCTTGTGGCTAGACCACTGGAATCTGATTTCACACCTGGAGAG CAAACTGTAGATGCCGATGGTGGAGGTTTATCCCTTGCAAGCAAGTTAAGGAGCTTGTCAGCTGAAGGCTTTGTGCAGCTTTTGGGTGCTATTTTCAGGA TTGTACAGGTTCATTTGATGCGGGCTGCAGAAGTGAAAAGAGCAATAGAATGGATTATGAGCAACATAGATGGACATTATGCTGCAGATTCAGTTGCTGC TGCAATTGCAGCTGGTTCTGTTGCCGCTGAAGCAGCTCAAGGGAGTGATGCTCACGTTGGTTCTTTAGTTCCATTTTTGACCCCGAGAAGTTCTAATAAG GCACAATCATCTCAAGGGAAAACTAACGATGCAGGAACTGCATCAAGTATTTCCAAGAATTTCAGAGCTGATGTACTGCGGGAGAATGCCGAGTCTGTAT TTGCTGCATGTGATGCTGCTCATGGAAGATGGGCAAAACTCCTTGGAGTGCGGGCTCTTCTTCATCCTAAGTTGAGATTGCAGGAGTTTCTAAGTATATA CAATATCACACAAGAGTTCATATCTTCCACGGAGAAGGTTGGGGGAAGATTAGGATATAGTATTCGCGGAACATTGCAGTCTCAGGCCAAAGCTTTTGTT GATTTGCAGCATGAGATACGGATGACCAAAATGAAGGCTGTACTTGATCAAGAGACATGGGTGGAAGTAGATGTTCCTGATGAATTCCAGGGCATAATAA CTTCATTGTTTTCTTCTGAAACCCTGATATCTGCGGAGCTAGATGCCGTACAACCTGATAAGACGGCTACATACTCTGAAGGGGTAATAAGCGATGATAG TTTAGTTGTCCCTGTCAGTGAAACACATGCTCCACAGCAGCTTCCGGGGAAGGATTCCATTGACAAGCTAGATAGTGCTCAAGGACAATCACATCCATTG TCTGAATCAACTGGAAGTAATAAACCTGATGTAGTAACATCATCAGCTCAGGGTAACAATAAGACAACAAAGGATCGTGGAAAATCTGCCTCTCAGCAAC TTTTCTATGGAGGCATCGGCTACCACATGGTTAATTGTGGCTTAATATTGGTGAAGATGTTGTCGGAGTATATTGATATGAACAACTATCTCCCGATGTT ATCTTCAGAAGTTGTACATCGTGTCGTTGAGATTTTGAAATTCTTCAATACAAGGACTTGTCAACTTGTCCTTGGAGCTGGTGCCATGCAGGTGTCTGGA TTGAAGTCCATCACTTCTAAACACTTGGCCCTTGCAAGTCAAGTCATCAGTTTTACATACGCTACTATTCCTGAAATCAAGCAAGTCCTTTTCCTCAAGG TACCTGAGACGCGGAAGGCCTTGCTGATGTCAGAGATAGACCGGGTTGCACAGGATTATAAGGTTCACCGGGATGAAATACATACAAAGCTGGTTCAAAT AATGAGAGAAAGGTTGTTTGTACATCTTCGGGGGTTGCCTCAAATTGTTGAGAGCTGGAACAGACCAGAAGAATCGGACCCACAGCCTAGTCAGTTTGCT CGATCTCTTACCAAGGAGGTTGGCTATCTACAACGTGTTCTGTCAAGAACTTTGCATGAGTCGGATGTTAAAGCGATTTTTCGGCAAGTTGTTGTGATCT TCCACACCCAAATTTCCGAGGCATTTTCACGGGTAGATATTAGCATTCCGCAAGCCAAGGACAGGCTGCATCGGGATGTCAAACATATCCTTGGATGCAT TAGATCGTTGCCTTCTGATAGCTTAGGCGAATCCAGTACCCCTAACTGGGGGCAACTTGATGAGTTCTTGGTACAGAAGTTTGGAGCAGAAGCTGAATGA
AA sequence Show only first row Show all	>Lus10038410 pacid=23158417 polypeptide=Lus10038410 locus=Lus10038410.g ID=Lus10038410.BGIv1.0 annot-version=v1.0 MDSQPSLTGRSLVDSTATTSSSSAVPSSFAISRANSSLAKSLSDASSQSLSSILNNPHVGKSGVYGSDATWVGWWSSSTAVAPPEFAPLISTKAVSDVSR SDFQSYLSSISEFYNRFEDIRNHTTKEETLKLESIGGQGEALVACLREVPALYFKEDFALEDGGTFRAACPFSNVSENLMLQEKLSHYLDVVELHLVKEI SLRSNSFFEAQGELQDLNVRIVEGCSRIRELKETIKLLDKDLVESARELQDLNGTRGNLLALQQKLRLILYVNQALSALKFVILVMLVTTFLIFSRMNCV YCLLVAAMFISVALLDLEWHKVLSGNLVDCQKFNVCHALCVQLVASGDCAGALDVTEDLQHLLDGDELTGLHCFRHLRDHVTTSVDSVNSILSTEFLRAS IHDTGETDVIILSKAKSRAANLTNGRVEEVKLDDEYTANFRERLLPIVVCLLRTAKLPSILRIYRDTLTADMKSAIKNAVAELLPILVARPLESDFTPGE QTVDADGGGLSLASKLRSLSAEGFVQLLGAIFRIVQVHLMRAAEVKRAIEWIMSNIDGHYAADSVAAAIAAGSVAAEAAQGSDAHVGSLVPFLTPRSSNK AQSSQGKTNDAGTASSISKNFRADVLRENAESVFAACDAAHGRWAKLLGVRALLHPKLRLQEFLSIYNITQEFISSTEKVGGRLGYSIRGTLQSQAKAFV DLQHEIRMTKMKAVLDQETWVEVDVPDEFQGIITSLFSSETLISAELDAVQPDKTATYSEGVISDDSLVVPVSETHAPQQLPGKDSIDKLDSAQGQSHPL SESTGSNKPDVVTSSAQGNNKTTKDRGKSASQQLFYGGIGYHMVNCGLILVKMLSEYIDMNNYLPMLSSEVVHRVVEILKFFNTRTCQLVLGAGAMQVSG LKSITSKHLALASQVISFTYATIPEIKQVLFLKVPETRKALLMSEIDRVAQDYKVHRDEIHTKLVQIMRERLFVHLRGLPQIVESWNRPEESDPQPSQFA RSLTKEVGYLQRVLSRTLHESDVKAIFRQVVVIFHTQISEAFSRVDISIPQAKDRLHRDVKHILGCIRSLPSDSLGESSTPNWGQLDEFLVQKFGAEAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Lus10038410 [exp]	0	1
AT4G38200			SEC7-like guanine nucleotide e...		Lus10022983 [exp]	1.4	0.9691
AT4G38200			SEC7-like guanine nucleotide e...		Lus10001620 [exp]	2.0	0.9600
AT2G45540			WD-40 repeat family protein / ...		Lus10009305 [exp]	3.0	0.9595
AT5G54200			Transducin/WD40 repeat-like su...		Lus10039934 [exp]	6.6	0.9371
AT4G38200			SEC7-like guanine nucleotide e...		Lus10015863 [exp]	6.6	0.9507
AT3G08530			Clathrin, heavy chain (.1)		Lus10030393 [exp]	7.1	0.9484
AT5G47490			RGPR-related (.1)		Lus10007471 [exp]	7.5	0.9456
AT2G25800			Protein of unknown function (D...		Lus10013392 [exp]	8.5	0.9425
AT5G04480			UDP-Glycosyltransferase superf...		Lus10028829 [exp]	8.5	0.9160
AT4G39850		AtABCD1, ACN2, ...	PEROXISOME DEFECTIVE 3, COMATO...		Lus10041690 [exp]	8.7	0.9315

Compare expression of checked genes

Lus10038410 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.