Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11330 310 / 1e-99 S-locus lectin protein kinase family protein (.1.2) AT4G23180 301 / 2e-97 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT1G11410 296 / 3e-94 S-locus lectin protein kinase family protein (.1) AT1G65790 296 / 4e-94 ARK1 receptor kinase 1 (.1) AT4G23130 291 / 5e-94 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT4G23270 291 / 7e-94 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) AT4G03230 298 / 1e-93 S-locus lectin protein kinase family protein (.1) AT4G21390 295 / 1e-93 B120 S-locus lectin protein kinase family protein (.1) AT4G23150 288 / 1e-92 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT1G11340 292 / 3e-92 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023391 [exp] 489 / 3e-164 AT1G11300 520 / 5e-168 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10020083 [exp] 304 / 9e-102 AT4G21390 427 / 6e-143 S-locus lectin protein kinase family protein (.1) Lus10014812 [exp] 313 / 5e-100 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033752 [exp] 298 / 6e-100 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1) Lus10037731 [exp] 305 / 9e-100 AT4G27290 644 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018408 [exp] 311 / 6e-99 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016876 [exp] 297 / 3e-98 AT4G27300 462 / 5e-156 S-locus lectin protein kinase family protein (.1) Lus10007600 [exp] 314 / 2e-97 AT1G11300 930 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10016871 [exp] 304 / 4e-97 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G437950 [exp] 353 / 1e-121 AT4G21390 406 / 5e-135 S-locus lectin protein kinase family protein (.1) Potri.001G442200 [exp] 361 / 2e-119 AT3G16030 528 / 5e-176 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.001G441400 [exp] 359 / 9e-119 AT3G16030 523 / 1e-174 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.001G441040 [exp] 339 / 4e-112 AT4G03230 322 / 1e-97 S-locus lectin protein kinase family protein (.1) Potri.011G039400 [exp] 319 / 4e-103 AT1G11330 822 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039100 [exp] 319 / 6e-103 AT1G11330 859 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039300 [exp] 318 / 7e-103 AT1G11330 829 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G037600 [exp] 315 / 2e-101 AT4G21390 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125351 [exp] 315 / 2e-101 AT4G27290 748 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G027501 [exp] 310 / 2e-101 AT4G23180 553 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF11883 [flax] [poplar] DUF3403 Domain of unknown function (DUF3403)
Representative CDS sequence Show only first row Show all	>Lus10038411 pacid=23158508 polypeptide=Lus10038411 locus=Lus10038411.g ID=Lus10038411.BGIv1.0 annot-version=v1.0 ATGGCTGCTACTGACGACTTCTCATTGCAGAATAAGCTTGGACAAGGAGGGTTTGGACCAGTGTTTAAGGTTTGTTTATCTCCTCTTTGGGAAGCTAGCG GAAGGGAAGAGGTGGCTGTGAAGAGACCGTCGAGAAGTTCAGGACAAGGGCTGGTGGAGTTTAGGAATGAGCTTATATTGATAGCCAAGTTGCAACATAC GAATCTCGTCAGGCTCCTCGGCTGTTGCATTCATGGGGAAGAGAGGACGCTGGTCTACGAATACATGCCGAACAAGAGCTTGGATTCTTTTATCTTCGGG ACAATGAAAGCTAGTAACATATTGCTCGATGAAAACCTCAACCCCAAGATCTCGCATTTTGGAATGGCCCGCATTTTCAACACCAATGCTTTGGAAGCTA ACACAAACAGGGTTGTAGGCACATACGGTTATATGTCTCCGGAGTACGCCATGGAAGGCACTTTCTCCATCAAATCCGACGTATTCAGCTTCGGGGTTTT ACTGCTGGAGATTGTGAGTAGTCGGAAGAATCATGGTCTTGTTCACCAAGATCCTCCGATCAACCGGGATATTTCTGAAATCACTGGCTTTTGCCAGACA TGGGAACTATGGAAAGAAGGGACACCATTGCAGTTGATGGATCCAACATTGGAGGAATCGTGTGTTGAGAACCGAATTCTCAGATGCATCAACGTGGGAC TGCTATGCATAGAATACAACGCAGAAGACAGGCCCACGATGTCCGAGGTTATATCGATGCTAACAAGTGAAATAGTACAGTTACCCACGCCAAAGGAACC CGCATTCAAAGCAGCAAAAAGACCGAGAAGCATGAGCATTGACATAGGCTCAAGCACAAGCAATACCGGTAGTTGCTCGATTAATAAAGTCACGATGACA ACAGTGAGTGGTCGATAG
AA sequence Show only first row Show all	>Lus10038411 pacid=23158508 polypeptide=Lus10038411 locus=Lus10038411.g ID=Lus10038411.BGIv1.0 annot-version=v1.0 MAATDDFSLQNKLGQGGFGPVFKVCLSPLWEASGREEVAVKRPSRSSGQGLVEFRNELILIAKLQHTNLVRLLGCCIHGEERTLVYEYMPNKSLDSFIFG TMKASNILLDENLNPKISHFGMARIFNTNALEANTNRVVGTYGYMSPEYAMEGTFSIKSDVFSFGVLLLEIVSSRKNHGLVHQDPPINRDISEITGFCQT WELWKEGTPLQLMDPTLEESCVENRILRCINVGLLCIEYNAEDRPTMSEVISMLTSEIVQLPTPKEPAFKAAKRPRSMSIDIGSSTSNTGSCSINKVTMT TVSGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11330			S-locus lectin protein kinase ...		Lus10038411 [exp]	0	1
AT1G61440			S-locus lectin protein kinase ...		Lus10038413 [exp]	1.4	0.8929
					Lus10038412 [exp]	4.5	0.7816
AT5G15110			Pectate lyase family protein (...		Lus10013267 [exp]	6.5	0.6399
AT4G12010			Disease resistance protein (TI...		Lus10007030 [exp]	7.1	0.6126
					Lus10000834 [exp]	17.5	0.7474
AT3G47570			Leucine-rich repeat protein ki...		Lus10030634 [exp]	17.6	0.7488
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Lus10026177 [exp]	27.7	0.6669
AT5G36930			Disease resistance protein (TI...		Lus10026845 [exp]	29.1	0.6613
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10027322 [exp]	30.6	0.6264
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10029463 [exp]	34.2	0.6124

Compare expression of checked genes

Lus10038411 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.