Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023391 [exp] 0 / 1 AT1G11300 520 / 5e-168 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G441400 [exp] 95 / 9e-23 AT3G16030 523 / 1e-174 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.001G441180 [exp] 86 / 1e-19 AT3G16030 274 / 3e-82 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.001G437875 [exp] 85 / 2e-19 AT5G18470 157 / 5e-44 Curculin-like (mannose-binding) lectin family protein (.1) Potri.001G442200 [exp] 50 / 3e-07 AT3G16030 528 / 5e-176 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038412 pacid=23158207 polypeptide=Lus10038412 locus=Lus10038412.g ID=Lus10038412.BGIv1.0 annot-version=v1.0 ATGGTGAGCTTCATCGTGTCCCGATTCTCGAACCCTAACGAGGACTACTTGACCTACGCAGCTTCTTCTTCTTTCGGCACCGAGCGGAACTTCTCAATCT GGAGGCCGAGGCACAACGGCGATATCGTTGACCGGAGCACTAGCCGCCTGATTCTGAACGCCGACTCCTGCGTCGGGAACAGCACGGCGAACGGCTGTGT CAGATGGGAGGGACCTGATTGCCGGCGGCAGTATGGTGGATCGAGGATGGTGCTGCGGCGGGGCGGATGGGTGAACACGGTGCCGAGAAGAGTCGATAAC AACGCCAGTCTCGGCATCGGTGACTGCAAGGACATTGTTGGCGAGACTGTGGATGCGTCGGTACCACCGTTGGTAACAGTAACGGCAGCGGATTTACCTT CTGGTTTAGGAATTTCAGCCAAGATCCTAATTCGAATGCTGTTCAGTACTATGTCATTGTTGGAGCCACCTCTGAACCAAGTCTACACCCTGCTACAAAG GAAAGGAATTGGATATGAGCATTGGTTGCTGTTGCAGTTGTTCTCTCCACTGTCATCGTTGGTATCCTGTGGTACTTGA
AA sequence Show only first row Show all	>Lus10038412 pacid=23158207 polypeptide=Lus10038412 locus=Lus10038412.g ID=Lus10038412.BGIv1.0 annot-version=v1.0 MVSFIVSRFSNPNEDYLTYAASSSFGTERNFSIWRPRHNGDIVDRSTSRLILNADSCVGNSTANGCVRWEGPDCRRQYGGSRMVLRRGGWVNTVPRRVDN NASLGIGDCKDIVGETVDASVPPLVTVTAADLPSGLGISAKILIRMLFSTMSLLEPPLNQVYTLLQRKGIGYEHWLLLQLFSPLSSLVSCGT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10038412 [exp]	0	1
AT1G61440			S-locus lectin protein kinase ...		Lus10038413 [exp]	1.0	0.8993
					Lus10000834 [exp]	1.4	0.8710
AT3G13810	C2H2ZnF	ATIDD11	indeterminate(ID)-domain 11 (....		Lus10004840 [exp]	1.7	0.8551
AT1G16260			Wall-associated kinase family ...		Lus10009751 [exp]	2.0	0.8355
AT1G11330			S-locus lectin protein kinase ...		Lus10038411 [exp]	4.5	0.7816
AT2G17480		ATMLO8, MLO8	MILDEW RESISTANCE LOCUS O 8, S...		Lus10019630 [exp]	6.5	0.7575
AT2G14080			Disease resistance protein (TI...		Lus10023330 [exp]	9.8	0.7596
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10027322 [exp]	11.6	0.7509
AT1G74250			DNAJ heat shock N-terminal dom...		Lus10012524 [exp]	18.5	0.7820
AT3G47570			Leucine-rich repeat protein ki...		Lus10030634 [exp]	19.4	0.8228

Compare expression of checked genes

Lus10038412 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.