Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30800 88 / 6e-21 Fasciclin-like arabinogalactan family protein (.1) AT4G29980 71 / 7e-15 unknown protein AT4G12950 61 / 4e-11 Fasciclin-like arabinogalactan family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023390 [exp] 285 / 2e-97 AT1G30800 116 / 2e-31 Fasciclin-like arabinogalactan family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G440800 [exp] 129 / 5e-35 AT1G30800 103 / 3e-25 Fasciclin-like arabinogalactan family protein (.1) Potri.011G155150 [exp] 76 / 2e-16 AT1G30800 67 / 8e-13 Fasciclin-like arabinogalactan family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038414 pacid=23158275 polypeptide=Lus10038414 locus=Lus10038414.g ID=Lus10038414.BGIv1.0 annot-version=v1.0 ATGGCCGCCGGCGGCGGCGGTCACTCCCGTTCTCGCCACATCCATCCTCGCCCGCACCACCGCAATCACAATCGAAACTCCACCACCGCCATGACTCCCG CTGCTCTTCCTCTTCAGGAGCAGAACTCTTCCTCCTCCAGGCAGCAGCAGCTGAACAACATAATCAACGCCCTGATCGGCGCCGGAGACTTCAACAACTG GGCCAACATCCTCTCAATCGCGGGGCCTTCCTACCTCCCGCTCTCGGCGACGTTCTTCATCCCGGCTGACGACTCACTCGTCGCGTCCCCGGCGGAAAAC GCATCGCCCCCGGTGAAAACCCCCTTCCCCCACCCTCTCATCTCCCCTTACCACATCGTCCCTCAGCGGCTGACGTTCGACGAGCTTCTCCAGTTCTCCA CTCTCTCACGCCTCCCGACGCTTCTCTCCTCCAAAACGATCCTCGTCACCAACGACTCGGCCGTCAATTTCACCCTCGACGGATCTCTGCTCTCGCATCC GGACCTCTTCACTTCCCCTGCCATTGTCGTCCACGGAATCTCCAACCTGATGGATTACTCGATTTACGGCGACGGCGCTTTGCTGCATACCAACTCCCGT GATCACCCGTCTCCAACGCAGCAACAGCAGCAGCAGCAAGTCTTGACCTCTGACGGAAGAATCCGGCACTCTGGAGCGCGATACTCGAACGACTACATCG TATCTTGGAAGTTCTTGATCTTGTGGCTGCTGTTTTAG
AA sequence Show only first row Show all	>Lus10038414 pacid=23158275 polypeptide=Lus10038414 locus=Lus10038414.g ID=Lus10038414.BGIv1.0 annot-version=v1.0 MAAGGGGHSRSRHIHPRPHHRNHNRNSTTAMTPAALPLQEQNSSSSRQQQLNNIINALIGAGDFNNWANILSIAGPSYLPLSATFFIPADDSLVASPAEN ASPPVKTPFPHPLISPYHIVPQRLTFDELLQFSTLSRLPTLLSSKTILVTNDSAVNFTLDGSLLSHPDLFTSPAIVVHGISNLMDYSIYGDGALLHTNSR DHPSPTQQQQQQQVLTSDGRIRHSGARYSNDYIVSWKFLILWLLF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30800			Fasciclin-like arabinogalactan...		Lus10038414 [exp]	0	1
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10002019 [exp]	9.2	0.8830
AT1G59950			NAD(P)-linked oxidoreductase s...		Lus10039266 [exp]	13.9	0.8336
					Lus10013654 [exp]	14.5	0.8564
AT2G20840			Secretory carrier membrane pro...		Lus10033712 [exp]	19.9	0.7289
AT1G26570		UGD1, ATUGD1	UDP-glucose dehydrogenase 1 (....		Lus10021639 [exp]	20.3	0.8393
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10029280 [exp]	20.4	0.8425
					Lus10019410 [exp]	29.0	0.8388
					Lus10035698 [exp]	33.5	0.6980
AT5G15430			Plant calmodulin-binding prote...		Lus10000141 [exp]	33.7	0.8347
AT5G16860			Tetratricopeptide repeat (TPR)...		Lus10018265 [exp]	35.9	0.7515

Compare expression of checked genes

Lus10038414 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.