Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44530 1055 / 0 Subtilase family protein (.1) AT4G20430 1053 / 0 Subtilase family protein (.1.2) AT1G30600 996 / 0 Subtilase family protein (.1) AT2G19170 584 / 0 SLP3 subtilisin-like serine protease 3 (.1) AT4G30020 580 / 0 PA-domain containing subtilase family protein (.1) AT1G62340 457 / 2e-148 ALE1 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) AT4G10550 266 / 7e-77 Subtilase family protein (.1.2.3) AT4G34980 260 / 7e-75 SLP2 subtilisin-like serine protease 2 (.1) AT5G67360 258 / 4e-74 ARA12 Subtilase family protein (.1) AT1G32950 252 / 6e-72 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023389 [exp] 1538 / 0 AT4G20430 1173 / 0.0 Subtilase family protein (.1.2) Lus10008060 [exp] 1177 / 0 AT4G20430 1112 / 0.0 Subtilase family protein (.1.2) Lus10006973 [exp] 560 / 0 AT4G30020 1334 / 0.0 PA-domain containing subtilase family protein (.1) Lus10001006 [exp] 526 / 2e-175 AT2G19170 629 / 0.0 subtilisin-like serine protease 3 (.1) Lus10000960 [exp] 517 / 2e-171 AT4G30020 658 / 0.0 PA-domain containing subtilase family protein (.1) Lus10040146 [exp] 514 / 5e-170 AT2G19170 655 / 0.0 subtilisin-like serine protease 3 (.1) Lus10001310 [exp] 496 / 5e-164 AT4G30020 1258 / 0.0 PA-domain containing subtilase family protein (.1) Lus10015559 [exp] 444 / 3e-143 AT1G62340 903 / 0.0 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) Lus10011018 [exp] 357 / 4e-112 AT2G19170 445 / 3e-146 subtilisin-like serine protease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G440300 [exp] 1206 / 0 AT4G20430 1107 / 0.0 Subtilase family protein (.1.2) Potri.011G155400 [exp] 1199 / 0 AT4G20430 1143 / 0.0 Subtilase family protein (.1.2) Potri.006G076200 [exp] 578 / 0 AT2G19170 1342 / 0.0 subtilisin-like serine protease 3 (.1) Potri.018G143400 [exp] 572 / 0 AT4G30020 1338 / 0.0 PA-domain containing subtilase family protein (.1) Potri.001G151100 [exp] 543 / 0 AT2G19170 615 / 0.0 subtilisin-like serine protease 3 (.1) Potri.011G010700 [exp] 298 / 2e-91 AT1G62340 631 / 0.0 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) Potri.001G163600 [exp] 281 / 2e-82 AT3G14240 1174 / 0.0 Subtilase family protein (.1) Potri.001G450600 [exp] 269 / 4e-78 AT1G32960 772 / 0.0 Subtilase family protein (.1) Potri.011G150900 [exp] 268 / 8e-78 AT1G32960 744 / 0.0 Subtilase family protein (.1) Potri.004G173900 [exp] 267 / 3e-77 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10038416 pacid=23158146 polypeptide=Lus10038416 locus=Lus10038416.g ID=Lus10038416.BGIv1.0 annot-version=v1.0 ATGGTGCTAGGCATTCGCTTTGCTGAGTTAGTAGCGGTGGTGTTGTGGTTGTCGGCTGGCGGGTTGTGTCAGAACGAAGCTCCAATTACGGCTGTTTACA TTGTCACTCTTAAGCAAACCCCTACTACTAGAGCTCCTCATTTCTACGGACAACTGGAGAAGAAGACGGATACCAATGTGTTTAGGAACAGGGCAGCTGG GACTGGGAAGAAACACCACAAAAATCCCTATAATTCAAGACGCGGGGAGAGCCGGGAATCGTACATAGCTCGTGCCCATGATTCGTTACTGAAGAGGGTG TTGAAGGGGGAGAAGTATCTAAAGTTGTATAGCTATCACTACTTGGTTAATGGCTTTGCTGCTTTTGTCACCCCACAACAGGCGGATAAGCTATCAATAA GGAAGGAAGTTGCCAATGTGGTGTTGGATTACTCTGTTAGGACAGCAACTACACACACTCCTCAGTTCCTGGGACTTCCAGGAGGTGCGTGGGTCCAAGA AGGTGGGTATGAGACTGCTGGTGAAGGAATTGTGATTGGCTTCATCGACACCGGGATTGATCCTACTCACCCCAGTTTCTCTGCGGATGATATTTCGGGA AGCTCCTCATACCCGGTTCCAAGCCACTACTCGGGTGTTTGCGAGGTTACTAGAGATTTCCCTTCTGGTTCTTGCAACAGGAAGCTCGTTGGTGCCCGCC ATTTCGCAGCATCTGCCATTACTAGGGGCATTTTCAACTCCACTCAAGACTATGCTTCACCTTTTGACGGTGATGGTCATGGCACGCATACAGCTTCTGT TGCTGCAGGAAACCATGGGATACCTGTGATAGTGTCGGGCCATTACTTTGGAAATGCGAGTGGAATGGCTCCTCGTGCACATGTTGCTGTTTACAAGGCA CTTTACAAGAGTTTTGGTGGGTTTGCTGCTGATGTTGTTGCTGCAATAGATCAGGCAGCTCAGGATGGAGTTGACATCATAAGTTTATCAATCACACCAA ACAGGCGACCTCCTGGTATTGCTACGTTCTTCAACCCCATTGATATGGCCTTGCTCTCAGCTGTGAAGGCTGGCATTTTTGTCGTCCAAGCAGCAGGCAA TACAGGGCCTTCGCCCAAGAGCATGTCTTCCTTCAGTCCATGGATATTCACTGTCGGTGCTGCTTCTCATGACAGAATCTACTCGAACTCCGTGACCCTA GGCAACAATGTCACGATTCAAGGCGTTGGCCTGGCACCGGGAACCGAGGAAGGTAAAATGTACACATTAGTTTCAGCGGTCCATGCATTGAACAATGAGA CCACAGTCACATCTGATATGTACTTGAGCGAATGCCAAGACTCCGGTAGCTTCGATAAAGGCATTGTGCAAGGAAACCTCTTGATCTGTAGTTATTCGGT TCGGTTTGTGCTGGGCGTCTCCACGATAAAACAAGCTTTGGAAACCGCCAGCAATCTCAGTGCAGCCGGTGTTGTGTTCTGTATGGATCCTTTTGTGCTT GGCTTTCAGTTGAATCCTATTCCCATGGGAATGCCTGGAATCATCATTCCAACCTCTGATGATTCCAAGATCTTGCTTCAGTACTACAATTCTTCGCTCG AAAGAGACGGAGGAAAAGTAGCGAAATTCGGAGCAACTGCTAGCATTTCGGGGGGACTTAAAGCCAACTTTAGTAACTCAGCTCCAAAAGTAATGTACTA CTCTGCTAGAGGACCGGATCCTGAAGACAGTTCTCTTGATGATGCTGATATTATGAAACCCAACTTGGTCGCTCCGGGACACTCTATATGGGCTGCTTGG AGCTCTCTAGGCACTGATTCAGTCGAATTCCAAGGTGAGAACTTTGCAATGATGTCGGGAACCAGCATGGCTGCTCCTCACATTGCAGGGCTTGCTGCTC TAATCAAGCAAAAGTTCCCATCTTTCAGCCCTTCAGCAATAGCTTCTGCACTCTCTACTACAGCATCTTTATCCGACAAGAATGGTGGCGCGATAATGGC TCAGCGTGCCTACTCCAACCCGGATGTGAATCAGTCTCCCGCAACTCCATTTGACATGGGGAGTGGCTTTGTGAATGGAACTGGTGCCCTCGACCCGGGT TTGATCTTCGATACGAGCTACGACGAGTATATGTCATTCATCTGCAGTATCAACGGGTCGGGACCTGTAGTCATGAACTTCACTGGCGAAAACTGCTGGA TGTACAACTCGACCATCACCGCTGCTGACCTTAACCTGCCCTCTATCGCAATCGCAAAGCTCGATGATCAAACAAGGACTGTGCTACGATCGGTGACCAA TGTAGGTGGTGGCAACGAGACGTACGCAGTGGGCTGGAGTGCACCTTACGGCGTGTCTCTGAAGGTGGCTCCGACTCATTTTGCGATCGGGAGCAACGAG AAGCAAGTGCTGACTATCTCCTTGGCCGCTACAATGAATAGCTCAGCTCCGAGCTACGGGAGGATCGGGCTGTTCGGGGATCACGGTCATGTCATTAACA TTCCAGTGGCTGTCATTGCCAAAACCTCGTATAATACTACTACCAGCAACACCAGGAACAGGCCATGA
AA sequence Show only first row Show all	>Lus10038416 pacid=23158146 polypeptide=Lus10038416 locus=Lus10038416.g ID=Lus10038416.BGIv1.0 annot-version=v1.0 MVLGIRFAELVAVVLWLSAGGLCQNEAPITAVYIVTLKQTPTTRAPHFYGQLEKKTDTNVFRNRAAGTGKKHHKNPYNSRRGESRESYIARAHDSLLKRV LKGEKYLKLYSYHYLVNGFAAFVTPQQADKLSIRKEVANVVLDYSVRTATTHTPQFLGLPGGAWVQEGGYETAGEGIVIGFIDTGIDPTHPSFSADDISG SSSYPVPSHYSGVCEVTRDFPSGSCNRKLVGARHFAASAITRGIFNSTQDYASPFDGDGHGTHTASVAAGNHGIPVIVSGHYFGNASGMAPRAHVAVYKA LYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAVKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYSNSVTL GNNVTIQGVGLAPGTEEGKMYTLVSAVHALNNETTVTSDMYLSECQDSGSFDKGIVQGNLLICSYSVRFVLGVSTIKQALETASNLSAAGVVFCMDPFVL GFQLNPIPMGMPGIIIPTSDDSKILLQYYNSSLERDGGKVAKFGATASISGGLKANFSNSAPKVMYYSARGPDPEDSSLDDADIMKPNLVAPGHSIWAAW SSLGTDSVEFQGENFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTTASLSDKNGGAIMAQRAYSNPDVNQSPATPFDMGSGFVNGTGALDPG LIFDTSYDEYMSFICSINGSGPVVMNFTGENCWMYNSTITAADLNLPSIAIAKLDDQTRTVLRSVTNVGGGNETYAVGWSAPYGVSLKVAPTHFAIGSNE KQVLTISLAATMNSSAPSYGRIGLFGDHGHVINIPVAVIAKTSYNTTTSNTRNRP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44530			Subtilase family protein (.1)		Lus10038416 [exp]	0	1
AT1G04030			unknown protein		Lus10003613 [exp]	3.0	0.9359
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10011223 [exp]	3.2	0.9329
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10018459 [exp]	3.9	0.9252
AT5G46070			Guanylate-binding family prote...		Lus10013965 [exp]	6.3	0.8917
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10030162 [exp]	7.3	0.9066
AT5G19420			Regulator of chromosome conden...		Lus10024157 [exp]	7.4	0.9130
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10031331 [exp]	9.3	0.8708
AT1G04030			unknown protein		Lus10008231 [exp]	13.1	0.9161
					Lus10039387 [exp]	14.3	0.8817
AT5G43810		PNH, ZLL, AGO10	ZWILLE, PINHEAD, ARGONAUTE 10,...		Lus10039386 [exp]	18.4	0.8721

Compare expression of checked genes

Lus10038416 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.