Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02230 308 / 6e-108 Ribosomal protein L19e family protein (.1) AT3G16780 306 / 4e-107 Ribosomal protein L19e family protein (.1) AT1G02780 305 / 1e-106 EMB2386 embryo defective 2386, Ribosomal protein L19e family protein (.1) AT4G16030 61 / 6e-12 Ribosomal protein L19e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038418 [exp] 333 / 9e-117 AT3G16780 337 / 3e-118 Ribosomal protein L19e family protein (.1) Lus10023387 [exp] 342 / 1e-116 AT3G16780 343 / 1e-116 Ribosomal protein L19e family protein (.1) Lus10016829 [exp] 320 / 2e-112 AT3G16780 363 / 2e-129 Ribosomal protein L19e family protein (.1) Lus10023388 [exp] 315 / 1e-110 AT3G16780 324 / 2e-114 Ribosomal protein L19e family protein (.1) Lus10037707 [exp] 303 / 1e-102 AT3G16780 343 / 8e-118 Ribosomal protein L19e family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G037500 [exp] 315 / 1e-110 AT1G02780 317 / 2e-111 embryo defective 2386, Ribosomal protein L19e family protein (.1) Potri.017G140800 [exp] 315 / 1e-110 AT3G16780 315 / 2e-110 Ribosomal protein L19e family protein (.1) Potri.015G029500 [exp] 315 / 2e-110 AT3G16780 309 / 5e-108 Ribosomal protein L19e family protein (.1) Potri.004G078000 [exp] 310 / 9e-109 AT1G02780 309 / 4e-108 embryo defective 2386, Ribosomal protein L19e family protein (.1) Potri.015G037100 [exp] 231 / 1e-77 AT1G02780 201 / 5e-66 embryo defective 2386, Ribosomal protein L19e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01280 [flax] [poplar] Ribosomal_L19e Ribosomal protein L19e
Representative CDS sequence Show only first row Show all	>Lus10038417 pacid=23158274 polypeptide=Lus10038417 locus=Lus10038417.g ID=Lus10038417.BGIv1.0 annot-version=v1.0 ATGGTGTCCGTAAAGCTCCAGAAGAGGCTCGCCGCGAGCGTCATGAAGTGCGGCAAGAAGAAGGTCTGGCTCGATCCAAATGAGGTCAACGAAATCTCCA TGGCCAACTCTCGCCAAAACATCAGGAAGCTTGTCAAGGATGGGTTCATCATCAGGAAGCCAACCAATATCCACTCCCGCTCTCGTGCTCGACGCATGAA TGAAGCCAAGAAGAAGGGCCGTCATTCTGGTTACGGTAAGAGGAAGGGTACGAGGGAGGCTAGGCTTCCAACAAAGATCCTGTGGATGAGGAGAATGCGA GTTCTTAGGAGGCTTCTGAGGAAGTATAGGGAAGCAAAGAAGATTGACAGGCACATGTACCATGACATGTACATGAAGTGCAAAGGTAATGTCTTTAAGA ACAAGCGTGTGCTGATGGAGAGTATTCACAAGTCCAAGGCAGAGAAGGCCAGAGAGAAGACCTTGTCTGATCAGTTCGAGGCTAAGAGGGCCAAGAACAA GGCTAGCAGGGAAAGGAAACATGCCAGGAGGGAGGAACGATTCGCCCAGGGTCCAGTAGCTATGGAGAAACCTGCTGCTGCTCCAGCCGTTGTTGCACCT CAAGGAGCATCAAAGAAATCCAAGAAGTGA
AA sequence Show only first row Show all	>Lus10038417 pacid=23158274 polypeptide=Lus10038417 locus=Lus10038417.g ID=Lus10038417.BGIv1.0 annot-version=v1.0 MVSVKLQKRLAASVMKCGKKKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTNIHSRSRARRMNEAKKKGRHSGYGKRKGTREARLPTKILWMRRMR VLRRLLRKYREAKKIDRHMYHDMYMKCKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERFAQGPVAMEKPAAAPAVVAP QGASKKSKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16780			Ribosomal protein L19e family ...		Lus10038417 [exp]	0	1
AT5G28060			Ribosomal protein S24e family ...		Lus10000938 [exp]	2.6	0.9493
AT3G16780			Ribosomal protein L19e family ...		Lus10037707 [exp]	4.2	0.9415
AT3G16780			Ribosomal protein L19e family ...		Lus10016829 [exp]	4.5	0.9417
AT3G06040			Ribosomal protein L12/ ATP-dep...		Lus10031180 [exp]	5.9	0.9143
AT3G53740			Ribosomal protein L36e family ...		Lus10016466 [exp]	6.0	0.9267
AT1G09590			Translation protein SH3-like f...		Lus10030607 [exp]	6.5	0.9492
AT3G46560		TIM9, EMB2474	embryo defective 2474, Tim10/D...		Lus10037964 [exp]	6.7	0.9294
AT5G24510			60S acidic ribosomal protein f...		Lus10028876 [exp]	8.8	0.9385
AT2G44120			Ribosomal protein L30/L7 famil...		Lus10004220 [exp]	10.4	0.9464
AT1G23100			GroES-like family protein (.1)		Lus10036055 [exp]	10.9	0.9034

Compare expression of checked genes

Lus10038417 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.