Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02230 277 / 1e-94 Ribosomal protein L19e family protein (.1) AT1G02780 274 / 2e-93 EMB2386 embryo defective 2386, Ribosomal protein L19e family protein (.1) AT3G16780 274 / 2e-93 Ribosomal protein L19e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038417 [exp] 308 / 6e-107 AT3G16780 348 / 9e-124 Ribosomal protein L19e family protein (.1) Lus10023387 [exp] 310 / 2e-103 AT3G16780 343 / 1e-116 Ribosomal protein L19e family protein (.1) Lus10016829 [exp] 288 / 5e-99 AT3G16780 363 / 2e-129 Ribosomal protein L19e family protein (.1) Lus10023388 [exp] 281 / 1e-96 AT3G16780 324 / 2e-114 Ribosomal protein L19e family protein (.1) Lus10037707 [exp] 271 / 6e-89 AT3G16780 343 / 8e-118 Ribosomal protein L19e family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G037500 [exp] 284 / 3e-97 AT1G02780 317 / 2e-111 embryo defective 2386, Ribosomal protein L19e family protein (.1) Potri.015G029500 [exp] 283 / 4e-97 AT3G16780 309 / 5e-108 Ribosomal protein L19e family protein (.1) Potri.017G140800 [exp] 281 / 3e-96 AT3G16780 315 / 2e-110 Ribosomal protein L19e family protein (.1) Potri.004G078000 [exp] 279 / 2e-95 AT1G02780 309 / 4e-108 embryo defective 2386, Ribosomal protein L19e family protein (.1) Potri.015G037100 [exp] 200 / 9e-65 AT1G02780 201 / 5e-66 embryo defective 2386, Ribosomal protein L19e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01280 [flax] [poplar] Ribosomal_L19e Ribosomal protein L19e
Representative CDS sequence Show only first row Show all	>Lus10038418 pacid=23158376 polypeptide=Lus10038418 locus=Lus10038418.g ID=Lus10038418.BGIv1.0 annot-version=v1.0 ATGGTGTCCGTCAAGCTCCAGAAGAGGCTCGCTGCGAGCGTCATGAAGTGCGGCAAGAAGAAGGTCTGGCTCGATCCCAATGAGGTCAACGAAATCTCCA TGGCCAACTCTCGCCAAAACATCAGGAAGCTCGTCAAGGATGGGTTCATCATCAGGAAGCCAACCAACATCCACTCCCGCTCCCGAGCTCGCCGTATGAA TGAAGCCAAGAAGAAGGGTCGTCATTCTGGATATGGTAAGAGGAAGGGTACTAGGGAGGCTAGGCTTCCAACAAAGATCCTGTGGATGAGGAGAATGCGA GTTCTTAGGAGGCTTCTGAGGAAGTATAGGGAAGCGAAGAAGATTGACAGGCACATGTACCATGACATGTACATGAAGTGCAAGGGTAATGTCTTTAAGA ACAAGCGTGTTAAGAACAAGCGTGTGCTGATGGAGAGTATTCACAAGTCCAAGGCAGAGAAGGCCAGAGAGAAGACCTTGTCTGATCAGTTTGAGGCTAA GAGGGCCAAGAACAAGGCTAGCAGGGAAAGGAAGCATGCCAGGAGGGAGGAACGATTTGCCCAGGGTCCAGTAGTTGCTGAGAAACCTGCTGCCCCAGCT GTTGCTGCACCTCAAGCAACTGGTGCCTCATCGCAAAAGTCACCAGCTGGGAATCGGCATCGAAGAGAGCGCCTCGCCATCTCAATGCCTCATCGCAAGG GTCACCCGCTGGGAATCGTCCTCGAGAAGAACGAGCGGCTTACCATCTCGAGCATATCCTGTACTCCAACATGGACCCTCGCGATCTCTTAA
AA sequence Show only first row Show all	>Lus10038418 pacid=23158376 polypeptide=Lus10038418 locus=Lus10038418.g ID=Lus10038418.BGIv1.0 annot-version=v1.0 MVSVKLQKRLAASVMKCGKKKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTNIHSRSRARRMNEAKKKGRHSGYGKRKGTREARLPTKILWMRRMR VLRRLLRKYREAKKIDRHMYHDMYMKCKGNVFKNKRVKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERFAQGPVVAEKPAAPA VAAPQATGASSQKSPAGNRHRRERLAISMPHRKGHPLGIVLEKNERLTISSISCTPTWTLAIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16780			Ribosomal protein L19e family ...		Lus10038418 [exp]	0	1
AT5G02050			Mitochondrial glycoprotein fam...		Lus10024351 [exp]	8.8	0.8596
AT3G44750		HDT1, HDA3, ATH...	HISTONE DEACETYLASE 2A, histon...		Lus10009390 [exp]	12.8	0.8420
AT2G36660		PAB7	poly(A) binding protein 7 (.1)		Lus10027733 [exp]	20.8	0.8100
AT5G05520			Outer membrane OMP85 family pr...		Lus10007514 [exp]	23.7	0.8388
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10018284 [exp]	25.0	0.8399
AT2G44640			unknown protein		Lus10019499 [exp]	28.7	0.8366
AT4G00026		SD3	SEGREGATION DISTORTION 3, unkn...		Lus10028190 [exp]	29.8	0.8245
AT1G80530			Major facilitator superfamily ...		Lus10001678 [exp]	33.0	0.8229
AT4G20020			unknown protein		Lus10037713 [exp]	33.5	0.7514
AT3G53740			Ribosomal protein L36e family ...		Lus10025342 [exp]	37.0	0.8235

Compare expression of checked genes

Lus10038418 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.