Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05270 64 / 6e-12 TraB family protein (.1) AT2G32340 47 / 4e-06 TraB family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023387 [exp] 236 / 4e-75 AT3G16780 343 / 1e-116 Ribosomal protein L19e family protein (.1) Lus10038420 [exp] 127 / 3e-34 AT1G05270 371 / 6e-127 TraB family protein (.1) Lus10031571 [exp] 77 / 2e-16 AT1G05270 368 / 3e-127 TraB family protein (.1) Lus10015104 [exp] 73 / 7e-15 AT1G05270 447 / 4e-158 TraB family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G121800 [exp] 66 / 2e-12 AT1G05270 323 / 6e-109 TraB family protein (.1) Potri.007G121900 [exp] 62 / 3e-11 AT1G05270 404 / 7e-140 TraB family protein (.1) Potri.017G038500 [exp] 58 / 1e-09 AT1G05270 417 / 1e-146 TraB family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038419 pacid=23158506 polypeptide=Lus10038419 locus=Lus10038419.g ID=Lus10038419.BGIv1.0 annot-version=v1.0 ATGAATCGCTTAACTCTGCATGTCCCGACGTTTAACTCGCTCCATTTGTCCCGATCCGCAGCCGGCGGCACGGTAGTCACTAACAAGTTACGCCTCCGCG GTAAACTAAACCCTCCGCTATTCCACCGCTTCATTCGGTTTCCACACCAGAATGCCGCCACCTCCCGATCATGCAACTCGTATTCCACAGAAGAAAAGGC TGGCGTGCTGCCGGAATCCTCACGTGCCGGGAGTAGCAGTCCGGTGAGAGGAAGAACGTTGCTACCGGGAACGGTCGTGCTGACGTGTCACTCTAGCAAT GTGTTCTTGCTTGGCACGACTCATGGTTCAGAGACATCTTGCAGAGAAGTTGAAGCTGTCATCCGTTTCTTGAAACCGGAGATTGCCGGTAGTGAACTAT ATCCGGGTACAGAGAGCGAGTTCCTTGTGGCATATGAAGAAGCAAAAGCATGTGGCGCTAAAGTGATATTTGGAGATCGTCCTATACTGATCACTAGGAT TGGAGTTCCTGCTGAGGGGTTGAATCGTTGGATGAATGATTTGAGCGACCCCACTATTATGGAAACCATGATAGAAGAACTCATGAAGCCATACCGGAAA CCAGTATTGATGAAGACCATTACCTCTATCGGTGTCGTTGCTGTTGGAGTGGCGATTGTTACAGGCATCTTCCTTTCTCGCTAG
AA sequence Show only first row Show all	>Lus10038419 pacid=23158506 polypeptide=Lus10038419 locus=Lus10038419.g ID=Lus10038419.BGIv1.0 annot-version=v1.0 MNRLTLHVPTFNSLHLSRSAAGGTVVTNKLRLRGKLNPPLFHRFIRFPHQNAATSRSCNSYSTEEKAGVLPESSRAGSSSPVRGRTLLPGTVVLTCHSSN VFLLGTTHGSETSCREVEAVIRFLKPEIAGSELYPGTESEFLVAYEEAKACGAKVIFGDRPILITRIGVPAEGLNRWMNDLSDPTIMETMIEELMKPYRK PVLMKTITSIGVVAVGVAIVTGIFLSR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05270			TraB family protein (.1)		Lus10038419 [exp]	0	1
AT5G02070			Protein kinase family protein ...		Lus10020667 [exp]	4.7	0.7885
					Lus10021739 [exp]	6.8	0.7789
					Lus10004437 [exp]	8.3	0.7789
AT2G24370			Protein kinase protein with ad...		Lus10027593 [exp]	9.6	0.7789
AT3G08030			Protein of unknown function, D...		Lus10029502 [exp]	10.7	0.7789
AT3G18170			Glycosyltransferase family 61 ...		Lus10032454 [exp]	11.7	0.7789
AT5G02910			F-box/RNI-like superfamily pro...		Lus10000727 [exp]	12.7	0.7789
AT1G07060			unknown protein		Lus10031856 [exp]	13.0	0.5302
					Lus10039674 [exp]	13.6	0.7789
AT1G30700			FAD-binding Berberine family p...		Lus10031080 [exp]	14.4	0.7789

Compare expression of checked genes

Lus10038419 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.