Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05270 347 / 3e-117 TraB family protein (.1) AT2G32340 328 / 6e-110 TraB family protein (.1) AT5G52030 109 / 3e-26 TraB family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015104 [exp] 379 / 6e-130 AT1G05270 447 / 4e-158 TraB family protein (.1) Lus10023387 [exp] 350 / 3e-116 AT3G16780 343 / 1e-116 Ribosomal protein L19e family protein (.1) Lus10031571 [exp] 320 / 1e-107 AT1G05270 368 / 3e-127 TraB family protein (.1) Lus10038884 [exp] 121 / 2e-30 AT5G52030 458 / 3e-161 TraB family protein (.1.2) Lus10015005 [exp] 121 / 2e-29 AT5G52030 461 / 5e-156 TraB family protein (.1.2) Lus10038419 [exp] 93 / 1e-21 AT1G05270 68 / 3e-13 TraB family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G121900 [exp] 360 / 6e-122 AT1G05270 404 / 7e-140 TraB family protein (.1) Potri.017G038500 [exp] 348 / 2e-118 AT1G05270 417 / 1e-146 TraB family protein (.1) Potri.007G121800 [exp] 278 / 2e-90 AT1G05270 323 / 6e-109 TraB family protein (.1) Potri.012G133900 [exp] 120 / 4e-30 AT5G52030 426 / 7e-149 TraB family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0572 [flax] [poplar] TIKI PF01963 [flax] [poplar] TraB TraB family
Representative CDS sequence Show only first row Show all	>Lus10038420 pacid=23158115 polypeptide=Lus10038420 locus=Lus10038420.g ID=Lus10038420.BGIv1.0 annot-version=v1.0 ATGAATCGCTTAACTCGCCAAGTCCCAATGTTTAACTCGCTCCATTTACCCCCCTCAGCCGCCGCCACGGTGGTCACTAACAAAGTAAGCCTCCGCAGTA AACAATTCCCTCCGATATTCCACCGCTTCATTCGGTTTCCACACCAGACTCATCCCAACACCCCTTTATACGCCACCCGAGCCGGCAATTTTCATTCCGC TAAAATGGATCGCGTGTCGCCGGAATCATCACGTGCCGGGGACGAATCCGTCCACGTCGTCCATAATCCTGGTCGCGGTGGCAGTCCGGCGAGTGGAAGT ACGGAGCCGAACGGGGAGGGAGAAACGGTCTCGATCCCCGAGGAGCTTTCCACAACGGTGGTGCTGACGTGTCAGTCCACCGCTAAAACTGGCTCTTGCA ATGTGTACTTGATTGGCACTTCTCATGTTTCTGAGAAATCTTGCAGAGAAGTTGAAGCTGTCATCCGTTTCTTGAAACCGGAGGTAGTCTTTCTGGAGTT GTGCTCTGATCGAAAGAATTTGCTTACACGGCAGGATCTAACGGTGCCAACTTTCGGAGAAATGTTGCAGAAGTGGAAGAAGAAACATAACGTGTTTGGA ATACTGTATAGCTGGTTTCTTGCCAAGGCAAGACACTCCTATTTCATACAAGCTCTCTACTTGTCAATCTGTAAAGTATGCCCCATAACTTCACTGTTGC ATTCTCAGATTGCCAGTAAGCTTGAAGTGTTTCCGGGTTCAGAGTTCCGTGTGGCATCAGAAGAAGCAAAAGCATGTGGTGCTAAAGTGATACTTGGAGA TCGTCCTGTACAGGTAACGTTGCAGAGAACATGGCGGAAAATGCCACTTCGGCATAAGGCAAAACTAGTATACTCTTTAGCTTTTCGAGCAGTCTTCGTA CCAAGTCCTGTGAAGCTGACGAGAATGGCAAGTCTCAAGGAGATGGAAGATGTCGATATGTTGACTCTTGCGATTCGAGAAATGAGCAAGGCATACCCCA CTCTTATGGAAACCTTGGTGCATGAGCGAGATCAGTACATGGCATCCATGTTACATAAAGTTGCTAGTGAGCATTCGCTGGTTGTTGCTGTTGTCGGAAG AGGCCATCTTCAAGGAATCAAGAAGCATTGGCAACAGCCTGTTTCGATAGAAGAACTCTTGAAAATTCCAGACCGAAAATCAGTGGTCTCGGTATTGAAG ACCATCACCTCCATCGGTGTTGTTGCTGCTGGAGCGGCTATTGTTTCAGGCATCTATATTTCTCGCAAGAAATAG
AA sequence Show only first row Show all	>Lus10038420 pacid=23158115 polypeptide=Lus10038420 locus=Lus10038420.g ID=Lus10038420.BGIv1.0 annot-version=v1.0 MNRLTRQVPMFNSLHLPPSAAATVVTNKVSLRSKQFPPIFHRFIRFPHQTHPNTPLYATRAGNFHSAKMDRVSPESSRAGDESVHVVHNPGRGGSPASGS TEPNGEGETVSIPEELSTTVVLTCQSTAKTGSCNVYLIGTSHVSEKSCREVEAVIRFLKPEVVFLELCSDRKNLLTRQDLTVPTFGEMLQKWKKKHNVFG ILYSWFLAKARHSYFIQALYLSICKVCPITSLLHSQIASKLEVFPGSEFRVASEEAKACGAKVILGDRPVQVTLQRTWRKMPLRHKAKLVYSLAFRAVFV PSPVKLTRMASLKEMEDVDMLTLAIREMSKAYPTLMETLVHERDQYMASMLHKVASEHSLVVAVVGRGHLQGIKKHWQQPVSIEELLKIPDRKSVVSVLK TITSIGVVAAGAAIVSGIYISRKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05270			TraB family protein (.1)		Lus10038420 [exp]	0	1
AT4G34480			O-Glycosyl hydrolases family 1...		Lus10039923 [exp]	20.0	0.4832
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Lus10008025 [exp]	21.0	0.4948
AT1G48745			unknown protein		Lus10007969 [exp]	24.6	0.4923
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Lus10031191 [exp]	27.3	0.4855
					Lus10013743 [exp]	61.3	0.4439
AT5G28690			Protein of unknown function (D...		Lus10005536 [exp]	64.9	0.4112
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10023976 [exp]	205.0	0.3552

Compare expression of checked genes

Lus10038420 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.