Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30630 434 / 2e-155 Coatomer epsilon subunit (.1) AT2G34840 431 / 6e-154 Coatomer epsilon subunit (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023385 [exp] 491 / 1e-177 AT1G30630 495 / 5e-179 Coatomer epsilon subunit (.1) Lus10003497 [exp] 457 / 7e-165 AT1G30630 467 / 2e-168 Coatomer epsilon subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G155800 [exp] 449 / 3e-161 AT1G30630 506 / 0.0 Coatomer epsilon subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF04733 [flax] [poplar] Coatomer_E Coatomer epsilon subunit
Representative CDS sequence Show only first row Show all	>Lus10038422 pacid=23158303 polypeptide=Lus10038422 locus=Lus10038422.g ID=Lus10038422.BGIv1.0 annot-version=v1.0 ATGGCGTCGGCACCCGATCACCTCTTCAATCTGCGCAACAATTTCTACTTGGGAGCATTCCAGGCTGCGATCAACAACAGCGACGTTCCCAATCTCTCCC CGGAGGATGCTGTTGAGCGGGACTGCCTCGTCCACCGCTCTTACATTGCTCTTCGAAGCCATCAGCTCGTGATCAGTGAGATCGACGATAGCGCTGCAAC TCCTCTCCAGGCAGTCAAGTTGCTTGCCTTATACCTCTCAAGCTCTGATAACAAGCAATCTGTAATTGCGAGCTTGAAAGAGTGGCTAGCTGATTCAGCT ATTGGAAATAATGCCATTTTGAGGCTGATTGCGGGGATCATATTCATGAACGAAGAGGACTATAATGAGGCTCTGAAGCACACTCATGCTGGAGGGACCA TGGAACTGCATGCATTGAATGTTCAAATTTTCATCAAGATGCACAGAACAGATTTTGCAGAGAAGCAGCTAAGAGTAATGCAACAGATTGATGAGGACCA TACCCTTACTCAGCTTGCAAATGCATGGGTGAATCTGGCTGTTGGCGGTTCGAAGATACGAGAAGCTCTACTCATGTTCCAAGATTTCTCGGAGAAATAT CCCATGACAGGATTAATATTGAATGGGAAGGCTGTTTGTTGCATGCACATGGGAAACTTTGATGAAGCAGAGGCATTGCTCCTTGAAGCACTAAACAAGG CAAGTTCCCAGTTGAAGCTTTCGGAACCGGAACACGTACTCCTGAAGCGTGTGGCCTCGGCCGAAGATAGCTTCGAAAGAGCAGTCCAATCAGTTGCATG A
AA sequence Show only first row Show all	>Lus10038422 pacid=23158303 polypeptide=Lus10038422 locus=Lus10038422.g ID=Lus10038422.BGIv1.0 annot-version=v1.0 MASAPDHLFNLRNNFYLGAFQAAINNSDVPNLSPEDAVERDCLVHRSYIALRSHQLVISEIDDSAATPLQAVKLLALYLSSSDNKQSVIASLKEWLADSA IGNNAILRLIAGIIFMNEEDYNEALKHTHAGGTMELHALNVQIFIKMHRTDFAEKQLRVMQQIDEDHTLTQLANAWVNLAVGGSKIREALLMFQDFSEKY PMTGLILNGKAVCCMHMGNFDEAEALLLEALNKASSQLKLSEPEHVLLKRVASAEDSFERAVQSVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30630			Coatomer epsilon subunit (.1)		Lus10038422 [exp]	0	1
AT5G05010			clathrin adaptor complexes med...		Lus10017131 [exp]	1.0	0.9456
AT1G12000			Phosphofructokinase family pro...		Lus10038700 [exp]	2.0	0.9380
AT4G04040		MEE51	maternal effect embryo arrest ...		Lus10037972 [exp]	3.5	0.9151
AT3G12110		ACT11	actin-11 (.1)		Lus10004956 [exp]	5.7	0.9266
AT1G34550		EMB2756	EMBRYO DEFECTIVE 2756, Protein...		Lus10028702 [exp]	7.5	0.9014
AT1G60810		ACLA-2	ATP-citrate lyase A-2 (.1)		Lus10013032 [exp]	8.5	0.8959
AT1G08280			Glycosyltransferase family 29 ...		Lus10019538 [exp]	8.5	0.9069
AT1G80690			PPPDE putative thiol peptidase...		Lus10026215 [exp]	9.5	0.8919
AT1G63000		UER1, NRS/ER	"UDP-4-KETO-6-DEOXY-D-GLUCOSE-...		Lus10006719 [exp]	10.0	0.9084
AT5G26667		PYR6	P-loop containing nucleoside t...		Lus10019509 [exp]	12.1	0.8854

Compare expression of checked genes

Lus10038422 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.