Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30620 681 / 0 MURUS4, HSR8, UXE1, MUR4 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G20460 667 / 0 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G44480 640 / 0 DUR DEFECTIVE UGE IN ROOT, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G34850 424 / 3e-150 MEE25 maternal effect embryo arrest 25, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G10960 269 / 1e-87 UGE5 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) AT1G64440 265 / 3e-86 REB1, RHD1, UGE4 UDP-GLUCOSE 4-EPIMERASE, ROOT HAIR DEFECTIVE 1, ROOT EPIDERMAL BULGER1, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23920 257 / 5e-83 ATUGE2, UGE2 UDP-GLC 4-EPIMERASE 2, UDP-D-glucose/UDP-D-galactose 4-epimerase 2 (.1) AT1G12780 242 / 4e-77 ATUGE1, UGE1 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) AT1G63180 234 / 6e-74 UGE3 UDP-D-glucose/UDP-D-galactose 4-epimerase 3 (.1) AT1G78570 112 / 9e-27 ATRHM1, RHM1, ROL1 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003496 [exp] 692 / 0 AT1G30620 656 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10013107 [exp] 691 / 0 AT1G30620 652 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10003875 [exp] 259 / 2e-83 AT4G10960 616 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10023074 [exp] 259 / 5e-83 AT4G10960 585 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10001822 [exp] 255 / 7e-82 AT4G10960 615 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10002246 [exp] 237 / 5e-75 AT1G12780 592 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) Lus10029572 [exp] 236 / 2e-73 AT1G12780 585 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) Lus10032394 [exp] 218 / 2e-68 AT4G10960 494 / 8e-178 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10038146 [exp] 115 / 2e-27 AT1G78570 1228 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G459700 [exp] 709 / 0 AT1G30620 730 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.011G156100 [exp] 709 / 0 AT1G30620 712 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.006G022000 [exp] 660 / 0 AT1G30620 676 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.016G020000 [exp] 655 / 0 AT1G30620 670 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.001G090700 [exp] 267 / 1e-86 AT4G10960 607 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Potri.003G140900 [exp] 259 / 1e-83 AT4G10960 606 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Potri.003G123700 [exp] 250 / 4e-80 AT1G12780 641 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) Potri.001G383500 [exp] 114 / 3e-27 AT1G78570 1190 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.011G103700 [exp] 113 / 4e-27 AT1G78570 1211 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.006G272700 [exp] 103 / 1e-23 AT1G78570 1078 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10038423 pacid=23158165 polypeptide=Lus10038423 locus=Lus10038423.g ID=Lus10038423.BGIv1.0 annot-version=v1.0 ATGGACTACCCAGATCCTAAAAGGAAGGGCAACTTTGTACCAAAGGTTGCTTTAGCTGCAATCTTGACTGCCGTATGCATACTTGTGCTTAATCGGTCCT CGTTTAATTACACAACCCCGTTCTCTGTACGTGAACCAGGTGTAACTCATGTCCTGGTGACCGGTGGTGCAGGCTACATTGGTTCGCATGCTACATTACG CCTTCTGAAAGATGGTCACCGGGTGACCATAGTGGACAACCTTTCACGTGGTAACAATGGTGCAGCTAAAATCCTTCAAGAACTGTTTCCAGAGCCCGGG AGGCTTCAATTTATATATGCAGATTTGGGAGATGCAAAAGCTGTTAACAAAATATTTGCAGAGAATGCTTTTGATGCGGTGATGCATTTCGCAGCCGTTG CATATGTTGGGGAAAGCACTATGTATCCTCTTAAGTATTATCATAATATAACATCAAATACCTTGGTGGTTTTGGAGTCAATGGCCAAGCACGATGTGAG GACTTTGATATATTCTAGCACATGCGCTACATATGGGGAGCCAGAAAAGATGCCTATAACTGAAGAAACACCACAGGTCCCCATTAATCCATATGGAAAA GCCAAAAAGATGGCAGAAGACATGATCCTTGATTTTTCTAAGACATCAGACATGGCGGTTATGATTTTGAGATACTTCAATGTGATTGGATCAGACCCAG GGGGCAGATTAGGCGAGGCTCCCAGGCCAGAGCTGCGTGAACATGGGCGGATTTCTGGTGCTTGTTTCGATGCAGCTCGTGGCATCATGCCAGGGTTGAA GGTTAAAGGAACAGACTACAAAACACATGATGGCACATGCATACGAGATTACATCGATGTAACAGACCTTGTGGATGCTCATGTGAAGGCCTTGGAAAAG GCTGAGCCTGGTAAAGTGGGAATCTACAATGTTGGCACAGGAAAAGGTAGATCAGTCAAAGAGTTTGTGGAGGCATGTAAGAAGGCGACCGGAGTGGACA TAAAGGTTGACTATTTACCTCGTCGCCCCGGTGACTACGCCGAAGTCTACAGTGATCCGTCAAAGATATTGGCCGAACTGAACTGGACAGCGCAGTACAC TGACCTGCAAGAGAGTTTGAAGACGGCATGGAAATGGCAGAAGGCGCACCGGGAAGGGTATGGAAGCCCTTCAGTGATGGCTTCTTGA
AA sequence Show only first row Show all	>Lus10038423 pacid=23158165 polypeptide=Lus10038423 locus=Lus10038423.g ID=Lus10038423.BGIv1.0 annot-version=v1.0 MDYPDPKRKGNFVPKVALAAILTAVCILVLNRSSFNYTTPFSVREPGVTHVLVTGGAGYIGSHATLRLLKDGHRVTIVDNLSRGNNGAAKILQELFPEPG RLQFIYADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTMYPLKYYHNITSNTLVVLESMAKHDVRTLIYSSTCATYGEPEKMPITEETPQVPINPYGK AKKMAEDMILDFSKTSDMAVMILRYFNVIGSDPGGRLGEAPRPELREHGRISGACFDAARGIMPGLKVKGTDYKTHDGTCIRDYIDVTDLVDAHVKALEK AEPGKVGIYNVGTGKGRSVKEFVEACKKATGVDIKVDYLPRRPGDYAEVYSDPSKILAELNWTAQYTDLQESLKTAWKWQKAHREGYGSPSVMAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Lus10038423 [exp]	0	1
AT2G42080			Chaperone DnaJ-domain superfam...		Lus10016258 [exp]	1.7	0.9089
AT3G03690		UNE7	unfertilized embryo sac 7, Cor...		Lus10020316 [exp]	4.7	0.9206
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10030726 [exp]	5.3	0.8892
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10034651 [exp]	8.7	0.8936
AT3G15350			Core-2/I-branching beta-1,6-N-...		Lus10043324 [exp]	11.7	0.8895
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Lus10011572 [exp]	15.7	0.8765
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Lus10034515 [exp]	17.3	0.9117
AT2G29550		TUB7	tubulin beta-7 chain (.1)		Lus10038458 [exp]	17.9	0.9053
AT5G59020			Protein of unknown function (D...		Lus10040721 [exp]	18.4	0.8642
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10032190 [exp]	23.0	0.8886

Compare expression of checked genes

Lus10038423 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.