Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73720 956 / 0 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) AT4G02730 107 / 2e-25 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 104 / 2e-24 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 87 / 8e-18 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 87 / 1e-17 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 86 / 2e-17 Transducin/WD40 repeat-like superfamily protein (.1) AT1G10580 85 / 2e-17 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 85 / 4e-17 TAF5 TBP-associated factor 5 (.1) AT2G21390 84 / 8e-17 Coatomer, alpha subunit (.1) AT5G23430 84 / 9e-17 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023381 [exp] 1069 / 0 AT1G73720 953 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Lus10003487 [exp] 115 / 2e-28 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 108 / 4e-26 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 107 / 2e-25 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 103 / 4e-24 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10041007 [exp] 85 / 4e-17 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10024447 [exp] 84 / 6e-17 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10021059 [exp] 84 / 9e-17 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10007449 [exp] 82 / 3e-16 AT5G25150 957 / 0.0 TBP-associated factor 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G156900 [exp] 1014 / 0 AT1G73720 948 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Potri.002G051900 [exp] 103 / 3e-24 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 102 / 4e-24 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 100 / 3e-23 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G172800 [exp] 89 / 2e-18 AT1G10580 874 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 87 / 6e-18 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G064600 [exp] 87 / 9e-18 AT1G10580 906 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G020200 [exp] 84 / 5e-17 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.008G002300 [exp] 84 / 1e-16 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 83 / 2e-16 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10038425 pacid=23158295 polypeptide=Lus10038425 locus=Lus10038425.g ID=Lus10038425.BGIv1.0 annot-version=v1.0 ATGACTCTAGAAATTGAAGCTCGAGATGTGATCAAGATTGTGCTTCAATTCTGCAAAGAGAACTCGCTGAACCAGACTTTCCAGACGCTGCAGAACGAGT GCCAAGTTTCGCTGAATACAGTTGATAGCATCGAAACTTTTGTCGCCGATATTAATGGTGGGAGGTGGGATGCCATTTTGCCCCAGGTGTCTCAGCTTAA GCTTCCTAGGAACAAGTTAGAGGACTTGTATGAGCATATTGTAATAGAAATGATAGAGCTCCGGGAGCTGGATACTGCAAGAGCCATCTTGAGGCAAACT CAGGTTATGGGAGTTATGAAACAGGAACAACCTGAACGATATTTGCGACTTGAGCATCTTCTAGTCAGAACCTACTTTGATCCGAATGAGGCTTACCAAG ATTCCACTAAAGAGAGGCGTCGTGCACAGATTGCCCAAGCGGTTGCTGGTGAAGTTAGTGTGGTTCCACCTTCCAGATTAATGGCTCTAATCGGGCAGGC ACTAAAGTGGCAGCAACACCAAGGATTACTTCCTCCTGGGACACAGTTTGACCTATTTCGAGGCACTGCTGCAATGAAGCAAGATGTAGATGACATTTAT CCAACAACACTTTCACACACTATCAAGTTTGGAACAAAAAGTCATGCGGAATGTGCTCGATTTTCACCTGATGGGCAGTTCCTCGTCTCATGTTCTGTTG ATGGCTTTATTGAGGTGTGGGATTATATGAGTGGAAAGCTGAAGAAGGATCTTCAATACCAAGCAGATGAAACCTTTATGATGCATGATGACCCTGTTCT CTGCGTTGATTTTAGCCGAGATTCTGAGATGCTTGCCTCTGGGTCGCAAGATGGGAAGGTTAAAGTTTGGCGTATAAGGACTGGGCAGTGCTTACGTCGC CTTGAACGAGCACACTCTCAGGGTGTCACAAGTTTGACGTTTTCCCGTGACGGCACTCAGCTACTAAGTACTTCGTTTGATAACACAGCCAGGATCCATG GCCTAAAATCTGGGAAAATGTTGAAAGAATTCCGTGGCCATTCATCTTTTGTAAATCATGCCATATTCACAAGTGATGGGACTCGTGTCATTACTGCTTC CAGTGATTGTACAGTCAAGGTTTGGGATGTGAAGGGTGCAGACTGTATACATACATTTCGGCCACCACCTCCATTGAGGGGGGGTGACGCTTCTGTGAAC TCTGTCCATCTCTTCCCTAAAAACTCCGATCACATTGTTGTATGTAACAAGACATCATCGATATGTATAATGACTCTACAAGGCCAGGTGGTGAAGAGTT TCTCTTCTGGTAAAAGAGAAGGCGGAGATTTCATTGCAGCCTGTATATCACCTAAAGGGGATTGGATCTACTGTGTTGGTGAAGACAGGAATATGTACTG CTTCAGCTACCAGTCTGGTAAATTAGAGCATCTAATGAAGGTTCACGAGAAGGACGTGATTGGTGTGACTCATCACCCCCATAGGAATCTGGTTGCTACC TACGGTGAAGACTGCACCATGAAGCTATGGAAGCCATGA
AA sequence Show only first row Show all	>Lus10038425 pacid=23158295 polypeptide=Lus10038425 locus=Lus10038425.g ID=Lus10038425.BGIv1.0 annot-version=v1.0 MTLEIEARDVIKIVLQFCKENSLNQTFQTLQNECQVSLNTVDSIETFVADINGGRWDAILPQVSQLKLPRNKLEDLYEHIVIEMIELRELDTARAILRQT QVMGVMKQEQPERYLRLEHLLVRTYFDPNEAYQDSTKERRRAQIAQAVAGEVSVVPPSRLMALIGQALKWQQHQGLLPPGTQFDLFRGTAAMKQDVDDIY PTTLSHTIKFGTKSHAECARFSPDGQFLVSCSVDGFIEVWDYMSGKLKKDLQYQADETFMMHDDPVLCVDFSRDSEMLASGSQDGKVKVWRIRTGQCLRR LERAHSQGVTSLTFSRDGTQLLSTSFDNTARIHGLKSGKMLKEFRGHSSFVNHAIFTSDGTRVITASSDCTVKVWDVKGADCIHTFRPPPPLRGGDASVN SVHLFPKNSDHIVVCNKTSSICIMTLQGQVVKSFSSGKREGGDFIAACISPKGDWIYCVGEDRNMYCFSYQSGKLEHLMKVHEKDVIGVTHHPHRNLVAT YGEDCTMKLWKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73720		SMU1	SUPPRESSORS OF MEC-8 AND UNC-5...		Lus10038425 [exp]	0	1
AT5G25800			Polynucleotidyl transferase, r...		Lus10029748 [exp]	2.4	0.8896
AT5G61330			rRNA processing protein-relate...		Lus10012469 [exp]	2.6	0.8842
AT1G05910			cell division cycle protein 48...		Lus10027038 [exp]	2.8	0.9074
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10019393 [exp]	3.0	0.8807
AT5G40340			Tudor/PWWP/MBT superfamily pro...		Lus10014546 [exp]	3.2	0.8904
AT3G48150		CDC23, APC8	anaphase-promoting complex sub...		Lus10004242 [exp]	3.7	0.8752
AT5G20170			RNA polymerase II transcriptio...		Lus10019427 [exp]	4.2	0.8913
AT1G29320			Transducin/WD40 repeat-like su...		Lus10023861 [exp]	5.4	0.8668
AT2G04235			unknown protein		Lus10025175 [exp]	6.9	0.9077
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10020889 [exp]	9.6	0.8664

Compare expression of checked genes

Lus10038425 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.