Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34830 247 / 2e-79 WRKY ATWRKY35, WRKY35, MEE24 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) AT1G30650 221 / 2e-69 WRKY ATWRKY14, AR411, WRKY14 WRKY DNA-binding protein 14 (.1) AT4G01250 150 / 2e-43 WRKY ATWRKY22, WRKY22 WRKY family transcription factor (.1) AT1G29280 141 / 2e-40 WRKY ATWRKY65, WRKY65 WRKY DNA-binding protein 65 (.1) AT5G52830 141 / 1e-39 WRKY ATWRKY27, WRKY27 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) AT3G58710 134 / 2e-37 WRKY ATWRKY69, WRKY69 RABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 69, WRKY DNA-binding protein 69 (.1.2) AT5G45050 139 / 1e-36 WRKY ATWRKY16, TTR1 TOLERANT TO TOBACCO RINGSPOT NEPOVIRUS 1, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT4G23550 127 / 1e-34 WRKY ATWRKY29, WRKY29 WRKY family transcription factor (.1) AT5G45260 117 / 3e-29 WRKY ATWRKY52, SLH1, RRS1 SENSITIVE TO LOW HUMIDITY 1, RESISTANT TO RALSTONIA SOLANACEARUM 1, ARABIDOPSIS THALIANA WRKY DOMAIN PROTEIN 52, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT2G30590 109 / 2e-27 WRKY WRKY21 WRKY DNA-binding protein 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007907 [exp] 150 / 1e-42 AT4G01250 228 / 2e-72 WRKY family transcription factor (.1) Lus10036399 [exp] 144 / 2e-41 AT4G01250 207 / 2e-66 WRKY family transcription factor (.1) Lus10007305 [exp] 134 / 2e-38 AT1G29280 164 / 9e-51 WRKY DNA-binding protein 65 (.1) Lus10029252 [exp] 134 / 1e-37 AT1G29280 166 / 9e-51 WRKY DNA-binding protein 65 (.1) Lus10039295 [exp] 134 / 8e-37 AT5G52830 170 / 4e-50 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Lus10027538 [exp] 135 / 1e-36 AT5G52830 171 / 1e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Lus10024676 [exp] 130 / 5e-36 AT4G01250 163 / 7e-49 WRKY family transcription factor (.1) Lus10032303 [exp] 130 / 1e-35 AT4G01250 171 / 1e-51 WRKY family transcription factor (.1) Lus10018815 [exp] 124 / 6e-32 AT4G01250 149 / 4e-41 WRKY family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G460600 [exp] 253 / 1e-81 AT1G30650 322 / 2e-106 WRKY DNA-binding protein 14 (.1) Potri.011G157100 [exp] 253 / 1e-81 AT1G30650 305 / 1e-99 WRKY DNA-binding protein 14 (.1) Potri.002G164400 [exp] 155 / 8e-45 AT4G01250 244 / 4e-79 WRKY family transcription factor (.1) Potri.014G090300 [exp] 153 / 5e-44 AT4G01250 250 / 1e-81 WRKY family transcription factor (.1) Potri.011G070100 [exp] 138 / 3e-39 AT1G29280 237 / 3e-78 WRKY DNA-binding protein 65 (.1) Potri.017G149000 [exp] 141 / 5e-39 AT5G52830 192 / 2e-57 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Potri.004G072000 [exp] 139 / 5e-38 AT5G52830 182 / 2e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Potri.003G132700 [exp] 137 / 5e-38 AT4G01250 121 / 5e-32 WRKY family transcription factor (.1) Potri.004G060900 [exp] 134 / 9e-38 AT1G29280 247 / 3e-82 WRKY DNA-binding protein 65 (.1) Potri.001G099001 [exp] 134 / 7e-37 AT4G01250 138 / 2e-38 WRKY family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10038426 pacid=23158313 polypeptide=Lus10038426 locus=Lus10038426.g ID=Lus10038426.BGIv1.0 annot-version=v1.0 ATGATTAACAATAATAATAGCCGTAATAATAATAATTATAACAGCGCTAGTTGTCTTGCTGGGCCGGTGCAGCAGATCTCGTCTCCGCGGAATCTGGGCA TCAAACGAAGAAAAAGCCAGGCGAAGAAGGTGGTGTGTATTCCGGCACCGGCGACGGTCAACAGCCGACCAAGCGGCGAAGTGGTTCCCTCCGATCTGTG GGCTTGGAGGAAGTACGGTCAGAAACCCATTAAAGGTTCTCCTTACCCCAGAGGATATTACAGGTGCAGCAGCTCAAAAGGGTGCTCGGCAAGGAAACAG GTGGAACGCAGCCGTACAGACCCAAACATGCTGGTCATCACCTACACTTCCGAGCACAACCACCCCTGGCCCACCCAGCGCAATGCTCTCGCCGGGTCGA CCAGGGCCCACCCTCACAGCAAGCACCACCATAACCATCACAGCAACAACCCACCCTCCTCCTCCGCCTCAGCCGGTGCACCTAAGAAAAAGGACGTCGA CAAACCATCCACGTCATCATCCAACACTAACAACAAGCAGGCATGCAGCATGAGCAGCAACGACAACGACAACGAAGCTGACGTGGACCACCATCACCAC CATCACCATCAGAGCCAGACGACATCGATGTCCGACTGCGTGGAGTTCAGCAACAGCTACAGGCCGACGCTGATGGATAATGCCGCGGCACCGGATCAAG ACTTCTTCGCCGGGTTGGATGAGATAGAGGCTGACGACCCTTTACAGATGTTGTTGAAAGACAATGGCAAGGATGAAGAAATTAGCGTTGGTGGTGGTTT GGAGCCCTTGTTTAGTAGTATGTTTGATTGGTCCACTTCTTCAGCTTCAGCACATGACCACACCGACAAGAGGGACATCAACTAA
AA sequence Show only first row Show all	>Lus10038426 pacid=23158313 polypeptide=Lus10038426 locus=Lus10038426.g ID=Lus10038426.BGIv1.0 annot-version=v1.0 MINNNNSRNNNNYNSASCLAGPVQQISSPRNLGIKRRKSQAKKVVCIPAPATVNSRPSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQ VERSRTDPNMLVITYTSEHNHPWPTQRNALAGSTRAHPHSKHHHNHHSNNPPSSSASAGAPKKKDVDKPSTSSSNTNNKQACSMSSNDNDNEADVDHHHH HHHQSQTTSMSDCVEFSNSYRPTLMDNAAAPDQDFFAGLDEIEADDPLQMLLKDNGKDEEISVGGGLEPLFSSMFDWSTSSASAHDHTDKRDIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34830	WRKY	ATWRKY35, WRKY3...	maternal effect embryo arrest ...		Lus10038426 [exp]	0	1
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10024246 [exp]	1.4	0.9678
AT1G72230			Cupredoxin superfamily protein...		Lus10025580 [exp]	1.4	0.9592
AT1G28290		AGP31	arabinogalactan protein 31 (.1...		Lus10025526 [exp]	3.5	0.9583
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10023615 [exp]	3.7	0.9463
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Lus10020798 [exp]	6.3	0.9531
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10034374 [exp]	6.3	0.9442
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Lus10003134 [exp]	7.1	0.9483
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030460 [exp]	8.1	0.9396
AT3G10120			unknown protein		Lus10039676 [exp]	9.7	0.9349
AT1G68760		ATNUDX1, ATNUDT...	NUDIX HYDROLASE 1, ARABIDOPSIS...		Lus10034784 [exp]	10.5	0.9127

Compare expression of checked genes

Lus10038426 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.