Gene [FLAX] | FIBexDB

Lus10038427 [FLAX]

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Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT3G51600	42 / 8e-06	LTP5	lipid transfer protein 5 (.1)
AT2G38530	41 / 2e-05	cdf3, LP2, LTP2	cell growth defect factor-3, lipid transfer protein 2 (.1)
AT2G18370	39 / 0.0001		Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
AT3G08770	38 / 0.0003	LTP6	lipid transfer protein 6 (.1.2)
AT2G15050	37 / 0.0007	LTP7, LTP	lipid transfer protein 7, lipid transfer protein (.1.2.3)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10001635 [exp]	56 / 7e-11	AT2G18370	37 / 9e-04	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
Lus10001431 [exp]	54 / 2e-10	AT2G18370	37 / 6e-04	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
Lus10004067 [exp]	49 / 3e-08	AT3G51590	51 / 3e-09	lipid transfer protein 12 (.1)
Lus10025234 [exp]	47 / 2e-07	AT2G38530	118 / 2e-35	cell growth defect factor-3, lipid transfer protein 2 (.1)
Lus10009003 [exp]	46 / 4e-07	AT3G51590	59 / 5e-12	lipid transfer protein 12 (.1)
Lus10029226 [exp]	44 / 3e-06	AT5G59310	94 / 3e-26	lipid transfer protein 4 (.1)
Lus10007280 [exp]	42 / 1e-05	AT5G59310	90 / 2e-24	lipid transfer protein 4 (.1)
Lus10026418 [exp]	42 / 1e-05	AT5G59320	115 / 2e-34	lipid transfer protein 3 (.1)
Lus10042210 [exp]	41 / 3e-05	AT5G59320	86 / 6e-23	lipid transfer protein 3 (.1)

Poplar homologues

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No hit found

PFAM info

Representative CDS sequence

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>Lus10038427 pacid=23158175 polypeptide=Lus10038427 locus=Lus10038427.g ID=Lus10038427.BGIv1.0 annot-version=v1.0

ATGTTCTCCTATCCAACTTCTTACATCGTCGCTTTCATAGCAATCGTTTTCCTCAGCATCGCTAGCGAAGCAGCGGAAGTGCCAGCAAACCCGAACTGTG

ATGCCTACAGAAACGCATCCTTCGGCTGCATCGCCTATGTTACAAGCACGGCGAAAGACACCCCAATCGTCCCCACTATGTGTTGCGATGACCTTAAGAA

GTATGATTCGAAACTCAGAACCTCCGATGAGAAGAGAAGTGCCTGCGTTTGCTCCTCCACCCACTTGGTCAACTCCCCTAGGGTCAACAAGGCGCGACTT

CGTAAGCTTTCCGAGGAGTGTAAGTTTCGGTTCCCGAAATCAGCCTCTGACTGCAACAAATTTAAGTAA

AA sequence

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>Lus10038427 pacid=23158175 polypeptide=Lus10038427 locus=Lus10038427.g ID=Lus10038427.BGIv1.0 annot-version=v1.0

MFSYPTSYIVAFIAIVFLSIASEAAEVPANPNCDAYRNASFGCIAYVTSTAKDTPIVPTMCCDDLKKYDSKLRTSDEKRSACVCSSTHLVNSPRVNKARL

RKLSEECKFRFPKSASDCNKFK

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51600		LTP5	lipid transfer protein 5 (.1)		Lus10038427 [exp]	0	1

Lus10038427 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.