Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20770 782 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G02330 404 / 5e-128 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 407 / 2e-127 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09040 396 / 8e-124 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74600 393 / 1e-123 OTP87 organelle transcript processing 87, pentatricopeptide (PPR) repeat-containing protein (.1) AT4G39530 381 / 5e-120 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 380 / 4e-119 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G18485 368 / 1e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 360 / 7e-113 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G16480 365 / 8e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015414 [exp] 443 / 4e-142 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 436 / 2e-139 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032091 [exp] 414 / 5e-133 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 416 / 1e-130 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014594 [exp] 402 / 8e-129 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009913 [exp] 395 / 3e-123 AT3G09040 1114 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001220 [exp] 385 / 5e-121 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 380 / 3e-119 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038400 [exp] 377 / 5e-118 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G111300 [exp] 478 / 2e-156 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 443 / 2e-142 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 437 / 9e-139 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 434 / 3e-138 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G187800 [exp] 420 / 9e-133 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G047600 [exp] 398 / 7e-125 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 374 / 2e-117 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G041200 [exp] 373 / 1e-116 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G074000 [exp] 371 / 1e-116 AT4G39952 892 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G021700 [exp] 366 / 2e-115 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10038431 pacid=23158230 polypeptide=Lus10038431 locus=Lus10038431.g ID=Lus10038431.BGIv1.0 annot-version=v1.0 ATGCAGGCTCTCCGGCCCCGCCTAACGAGCCTCCTGCAGTCTTGCATAGAGAAGAAATTGGGTCTATCATCAGCGAAAGTCCTCCACGCTAGCATCCTCC GCTCTGGCCTCTACGCAGACACATTCCTCTCGAACCGTCTGATCGAATTCTACTCCAGATGCAGCAGCACTAGCTATGCCCGCAACCTGTTCGACGCAAT TCCCAGCAAGAACATATACACCTGGAATGCCATCCTCAGCGAGTACTGCAGGGTCGGCCAGCTGGAAGACGCCTTCATGGTGTTCGACGAAATGTCCGAG AGAAACACCGTTTCCTGGAACAACTTGATCAGCGCGTTGGTGCGAGGTGGGTTCGAGAGGCAGGCATTGGATGTTTATCGTAGAATGATATTGGAAGGCT TTGTGCCCACTCACTGCACGTTGGCAAGTGTTTTGAGTGCTTGCGGTAGTTTGTTGGACGTCGAGTTTGGTAAGAGGTGCCATAGTCTTGCTTTAAAGAT TGGACTCGAGCTGAATAAGTATGTTGGTAATGCTTTGTTGTGTGTTTACGCCAAGTGTGGACTCCTTAGGGAAGCTACTGGACTGTTTACGGAAATACCA GAACCTAGTGAAGTTACTTTCACTGCAATGATGGGTGGGTTGGCGCAGTCTGACAGAGTTGCAGAGGCGTTAGAGATGTTTAAGTTGATGTGTAGGAAAG GGATCCGAGTTGATAGTGTCTCCTTATCTAGTGTTTTGGGTGTTTGTGCTAGAGGAGTGAATGGAGAAAGTGGGCAAAATGAATCGAACTGGGGAAATAT TCATGGCAAGCAGGTTCATGGACTTGGTATAAGACTAGGATTTGACACAAATCTTCATTTAGGGAATTCGTTGCTCGATATGTATGCGAAAGATGGGGAT ATGGAAAGTGCCGAGAAAGTTTTCGCTAATTTACCAGGTTATAGTGTTGTCTCTTGGAATATAATGATTGCTGGATACGGGCAGAAGTACCAAATTGAGA AAGCTAGAGAATTTCTCCAGAAAATGCAGAACCTTGGATTTGAACCTGATGAGGTTACTTGTATTAACATGTTAGCTGCATGTGCGAAGTCAGGGGACAT GGTGACTGCAAAGAAAATGTTTGGTAACATTTCTTGTCCCGGTACTAGTTCATGGAACGCTATGCTATCCGGGTATCTCTTGATCAGAAACCATGACGAA ATTCTTAATTTGTTCAGAGAAATGCAGTTCCAGTACGCAGACTGTGATCGAGCAACCTTCGCCATTGTTATTACTTCGTGCACAGCTATGGGGCTTTTGG ACGCAGCAACGCAGGTCCATGCTGCGTGGCAAAAGTCTGCCTTTAATAACGACTTATATGTTGCTAGTGGCCTTATAGCTTTGTATTCCAAGTGTCAGAA GCTTGAGATAGCACAGTGCATATTCGAAAACCTGCCTCAACTGGATATTGTTTGCTGGAATTCGATTATTGCAGGCTATTCAATTAGTTCTTTGGACAAG GAAGCTTTTGCTCATTTTAAGAGGATGCGGCAGAATGGGATGTCGCCGAACCAGTTTAGTTATGCTACTATTCTAAGTTCCTGTTCGAAACTTTTCTCTT CATCTCAAGGCAGACAGCTTCACTCTCAGATAATAAAAGATGGGTTCATCAATGATGTCTTTGTTGGCAGCACTCTCATTGGCATGTACTGCAAATGTGG TGAGGCAGACGATGCCCACCAATTCTTCAATATGATGCCTGAAAAGAGTATTGTTACTTGGAATGAGATGATTCACGGGTATGCTCAAGGTGGGCGGGGA GATGAAGCTGTCGGTATATACATGGAGATGGTCGAAGTTGGTGAGAAACCTGATTTAATAACCTTCATTGCTGTTTTGACTGCTTGCAGCCACTCTGGCT TGGTGGATGCAGGACTTGAAATTTTCAATTCGATGCAGCAAGACCATGGAGTGGACCCGATTTTGGATCACTATACTTGTATAATCGATGCTTTGGGCAG AGCTGGCCGTTTCCATGAAGCTGAAATCATACTGAATAGGATGCCATATAAGGATGACCCAATTGTTTGGGAAGTTTTGCTCAGTTCTTGTAGGGTTCAT GATAATGTGAGCTTAGCTAAAAGGGCAGCAGATGAACTCTTACGCTTGGACCCTCAAAATTCTTCCCCGTATGTTCTTCTGGCCAATATGTATACTTCAC TTGGAAGATGGGATGAGGCGAAGACAGTTAGAGAACTGATGGATGATAGACATGTCACCAAGGACCCAGGTTACAGTTACGTCGAGCACCACCGAAGTGG GACGAATTCGTCAATCCTCGATGAAAACCTGATGATGACCAATGAGGAATTCTGTATGGGAAACGTGTCTTGA
AA sequence Show only first row Show all	>Lus10038431 pacid=23158230 polypeptide=Lus10038431 locus=Lus10038431.g ID=Lus10038431.BGIv1.0 annot-version=v1.0 MQALRPRLTSLLQSCIEKKLGLSSAKVLHASILRSGLYADTFLSNRLIEFYSRCSSTSYARNLFDAIPSKNIYTWNAILSEYCRVGQLEDAFMVFDEMSE RNTVSWNNLISALVRGGFERQALDVYRRMILEGFVPTHCTLASVLSACGSLLDVEFGKRCHSLALKIGLELNKYVGNALLCVYAKCGLLREATGLFTEIP EPSEVTFTAMMGGLAQSDRVAEALEMFKLMCRKGIRVDSVSLSSVLGVCARGVNGESGQNESNWGNIHGKQVHGLGIRLGFDTNLHLGNSLLDMYAKDGD MESAEKVFANLPGYSVVSWNIMIAGYGQKYQIEKAREFLQKMQNLGFEPDEVTCINMLAACAKSGDMVTAKKMFGNISCPGTSSWNAMLSGYLLIRNHDE ILNLFREMQFQYADCDRATFAIVITSCTAMGLLDAATQVHAAWQKSAFNNDLYVASGLIALYSKCQKLEIAQCIFENLPQLDIVCWNSIIAGYSISSLDK EAFAHFKRMRQNGMSPNQFSYATILSSCSKLFSSSQGRQLHSQIIKDGFINDVFVGSTLIGMYCKCGEADDAHQFFNMMPEKSIVTWNEMIHGYAQGGRG DEAVGIYMEMVEVGEKPDLITFIAVLTACSHSGLVDAGLEIFNSMQQDHGVDPILDHYTCIIDALGRAGRFHEAEIILNRMPYKDDPIVWEVLLSSCRVH DNVSLAKRAADELLRLDPQNSSPYVLLANMYTSLGRWDEAKTVRELMDDRHVTKDPGYSYVEHHRSGTNSSILDENLMMTNEEFCMGNVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20770			Pentatricopeptide repeat (PPR)...		Lus10038431 [exp]	0	1
AT4G04670			Met-10+ like family protein / ...		Lus10002756 [exp]	2.0	0.8796
AT2G45030			Translation elongation factor ...		Lus10039840 [exp]	3.9	0.8696
AT1G14610		VALRS, TWN2	VALYL TRNA SYNTHETASE, TWIN 2,...		Lus10033331 [exp]	6.0	0.8858
AT2G45030			Translation elongation factor ...		Lus10018604 [exp]	9.4	0.8572
AT2G22070			pentatricopeptide (PPR) repeat...		Lus10016425 [exp]	12.0	0.7741
AT1G79120			Ubiquitin carboxyl-terminal hy...		Lus10014514 [exp]	13.0	0.8090
AT5G18820		Cpn60alpha2, EM...	embryo defective 3007, chapero...		Lus10036216 [exp]	13.6	0.8258
AT5G14580			polyribonucleotide nucleotidyl...		Lus10008763 [exp]	13.7	0.8714
AT5G06110			DnaJ domain ;Myb-like DNA-bind...		Lus10026919 [exp]	14.0	0.8595
AT4G08210			Pentatricopeptide repeat (PPR-...		Lus10028082 [exp]	14.2	0.8038

Compare expression of checked genes

Lus10038431 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.