Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34820 96 / 3e-23 bHLH bHLH053 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G30670 94 / 2e-22 bHLH bHLH052 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G21330 48 / 3e-06 bHLH bHLH087 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G00120 47 / 3e-06 bHLH IND1, GT140, bHLH040, IND, EDA33 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G09750 44 / 3e-05 bHLH HEC3, bHLH043 HECATE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G22100 42 / 0.0002 bHLH bHLH117 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G67060 42 / 0.0003 bHLH HEC1, bHLH088 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G50330 41 / 0.0004 bHLH HEC2, bHLH037 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G30980 41 / 0.0006 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005451 [exp] 102 / 4e-26 AT1G30670 115 / 4e-31 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10002213 [exp] 45 / 8e-06 AT5G01310 108 / 8e-28 APRATAXIN-like (.1) Lus10003386 [exp] 46 / 2e-05 AT5G01310 107 / 1e-24 APRATAXIN-like (.1) Lus10005710 [exp] 45 / 2e-05 AT3G50330 160 / 1e-48 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10003500 [exp] 45 / 3e-05 AT3G21330 192 / 5e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10009745 [exp] 45 / 3e-05 AT3G21330 112 / 2e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10042647 [exp] 44 / 5e-05 AT3G50330 163 / 1e-49 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012670 [exp] 44 / 5e-05 AT3G50330 158 / 3e-48 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G157700 [exp] 116 / 7e-31 AT2G34820 121 / 2e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G461000 [exp] 112 / 2e-29 AT1G30670 122 / 5e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G060900 [exp] 49 / 9e-07 AT4G00120 151 / 7e-46 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G191800 [exp] 49 / 2e-06 AT3G21330 230 / 2e-71 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G108000 [exp] 47 / 4e-06 AT4G00120 150 / 3e-45 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G044600 [exp] 46 / 6e-06 AT5G67060 150 / 7e-45 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.016G120800 [exp] 45 / 8e-06 AT5G01310 109 / 3e-28 APRATAXIN-like (.1) Potri.006G102600 [exp] 44 / 2e-05 AT5G01310 112 / 4e-29 APRATAXIN-like (.1) Potri.005G138900 [exp] 44 / 4e-05 AT3G50330 134 / 2e-38 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G125000 [exp] 43 / 0.0001 AT5G67060 137 / 2e-39 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10038432 pacid=23158392 polypeptide=Lus10038432 locus=Lus10038432.g ID=Lus10038432.BGIv1.0 annot-version=v1.0 ATGGCCTTAAGCTTCTGCTCCAGTTACCCAGAGTATCAGTTACCTTTCCTGACTACAGAGGAGGTGTCCGATTTCGATCCGGATTCGCTGCTGCTTCCAT TTGCTCACGACTTTGAAGATGATGGTGCTGCTGCTGGAGCTCAGCTCCAATTGGACTCCGACGGACTCATTTCCCTATCCCCTACTGAAGCTGCAACCTT CCCTCTGAATGAGCTTAACCCAAAGCGTCAGAGAACATTTCCCGCTAACTATGATCATTACTGCTACAATCCACTTCCATGGGAGCTTAACATCCTCCAG CACGGATACCCTAATTTTCCTGATTTGATCATTCCAGCAGTAGCTGCTCCTGTTATGCCCCAATTAGAGACGCCAGCTGGTGATAATGCAAAGGCAGAGA AGAAACAGAGCTTGTCGGCGCAGAGCGTTGCGGCGAGGCAGAGGAGGAGGAGGATCTCCGGCAAGACACAGGAGCTAGGGAAGCTGATTCCTGGCGGGAA TAAGATGAACACTGCTGAGATGTTCCAAGCTGCTGCTAATTACGTCAGGTTCTTGCAGTGCCAGATCAGCATTCTTCAACTCATGGGAGGAGATGATCAA TCTCCATCTCCTCCCAATGAGCTGCAGACGATTCTGGCATCGCATAGGATTCAACACAAGCTCTGCTCCGAACGCAGTTGCTTGGTCCCGAGGGAGCTGC TCCTCAGCCTCGTGAACCGTCCCGAGCTTCAATCGGTTACCGAGGAGATTGATGAGTTACTACTAGTGAAGAAGGAACAGTAA
AA sequence Show only first row Show all	>Lus10038432 pacid=23158392 polypeptide=Lus10038432 locus=Lus10038432.g ID=Lus10038432.BGIv1.0 annot-version=v1.0 MALSFCSSYPEYQLPFLTTEEVSDFDPDSLLLPFAHDFEDDGAAAGAQLQLDSDGLISLSPTEAATFPLNELNPKRQRTFPANYDHYCYNPLPWELNILQ HGYPNFPDLIIPAVAAPVMPQLETPAGDNAKAEKKQSLSAQSVAARQRRRRISGKTQELGKLIPGGNKMNTAEMFQAAANYVRFLQCQISILQLMGGDDQ SPSPPNELQTILASHRIQHKLCSERSCLVPRELLLSLVNRPELQSVTEEIDELLLVKKEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30670	bHLH	bHLH052	basic helix-loop-helix (bHLH) ...		Lus10038432 [exp]	0	1
AT2G01260			Protein of unknown function (D...		Lus10017987 [exp]	41.3	0.5455
AT5G19750			Peroxisomal membrane 22 kDa (M...		Lus10010446 [exp]	46.5	0.5343
AT5G10840			Endomembrane protein 70 protei...		Lus10010683 [exp]	47.2	0.5150
AT1G09080		BIP3	binding protein 3, Heat shock ...		Lus10026480 [exp]	65.4	0.5366
					Lus10033349 [exp]	81.9	0.5175
AT4G34850		LAP5	LESS ADHESIVE POLLEN 5, Chalco...		Lus10042388 [exp]	91.4	0.5248
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10027836 [exp]	97.5	0.4858
AT4G18650			transcription factor-related (...		Lus10007282 [exp]	124.5	0.4879
AT3G58860			F-box/RNI-like superfamily pro...		Lus10003216 [exp]	146.8	0.5063
AT3G55400		OVA1	OVULE ABORTION 1, methionyl-tR...		Lus10001706 [exp]	192.9	0.4861

Compare expression of checked genes

Lus10038432 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.