Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30660 297 / 6e-100 nucleic acid binding;nucleic acid binding (.1) AT1G30680 305 / 1e-98 toprim domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023380 [exp] 606 / 0 AT1G30680 294 / 1e-97 toprim domain-containing protein (.1) Lus10038434 [exp] 323 / 7e-106 AT1G30680 852 / 0.0 toprim domain-containing protein (.1) Lus10023379 [exp] 322 / 2e-105 AT1G30680 855 / 0.0 toprim domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G461200 [exp] 434 / 3e-153 AT1G30680 313 / 1e-100 toprim domain-containing protein (.1) Potri.001G461300 [exp] 331 / 2e-108 AT1G30680 828 / 0.0 toprim domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0413 [flax] [poplar] Toprim-like PF01751 [flax] [poplar] Toprim Toprim domain
Representative CDS sequence Show only first row Show all	>Lus10038433 pacid=23158434 polypeptide=Lus10038433 locus=Lus10038433.g ID=Lus10038433.BGIv1.0 annot-version=v1.0 ATGGCGGCACTCGAGATTGACATGGACGATTCATGCGAGCCTGGACAGTTCAGTCACTTGCTTTGCCCTAAGTGCAAAGGTGGCAAGACGATGGAGACCT GCTTATCTTTCCACATTATCCAAGACGGGGACTTTGCAATGTGGAGGTGTTTTCGTCCTAGTTGTGGATGGGCAGGGCAGGCCTTTGCTGACCACAGGGA AACCATTGATGGAATGAACTTGATTATCAAAGTTGAGTCAAGTGACAAGTTGACCTTTGAGGATTTGGGATTAGAGCCCTTAGGGAACAAGTTGATTAGA TTCTTCAACGAGAGAAAGATTTCTGAGGAAACCTTGCAAAGGAATGCTGTTATGCAGACGTCTCAGGGTGTCATTGCTTTTACTTATAGAGAAAATGGAT TGATTGTTGGCTGCAAGTACCGGACTTTAGAGAAAAGGTTTTGGCTGGAGACAGGAACCGAAAAATGGTTCTATGGGCTTGACGACATAAATGAAGCGAC GGAGCTAATTATAGTTGAAGGGGAAATTGATAAACTTTCTTTCGAGGAAGCTGGCTTCCGTAACTGTGTGAGTGTGCCGGCAGGTGCCCCAATGGAAGTT TCCTCTAGGGGTTTACCTTCTCGAAGAAAGGATAGAGCATTTAAGTTTGTCTGGAACTGCAAAGAGTACCTGGATAAGGTTCCACGCATTATCCTGGCTA CTGATGGTGACTCGTCTGGACAAGCGCTGGCAGAAGAGCTAGCACGCCGGTTGGGGAAAGAAAGATGTTGGATTGTACGTTGGCCCCGGAAAGATGACTC CAGTTTCTTCAAAGATGCAAATGAGGTTCTCGTATCATTGGGACCTAGAGCTTTGACAGAAGCAATTGAAAGCGCAGAGTTATACGGTAGTGATATGATC AAGGATCCAGAAGTTGAAGGTATTTGGAGCGTTTGA
AA sequence Show only first row Show all	>Lus10038433 pacid=23158434 polypeptide=Lus10038433 locus=Lus10038433.g ID=Lus10038433.BGIv1.0 annot-version=v1.0 MAALEIDMDDSCEPGQFSHLLCPKCKGGKTMETCLSFHIIQDGDFAMWRCFRPSCGWAGQAFADHRETIDGMNLIIKVESSDKLTFEDLGLEPLGNKLIR FFNERKISEETLQRNAVMQTSQGVIAFTYRENGLIVGCKYRTLEKRFWLETGTEKWFYGLDDINEATELIIVEGEIDKLSFEEAGFRNCVSVPAGAPMEV SSRGLPSRRKDRAFKFVWNCKEYLDKVPRIILATDGDSSGQALAEELARRLGKERCWIVRWPRKDDSSFFKDANEVLVSLGPRALTEAIESAELYGSDMI KDPEVEGIWSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30680			toprim domain-containing prote...		Lus10038433 [exp]	0	1
AT1G73530			RNA-binding (RRM/RBD/RNP motif...		Lus10042293 [exp]	4.4	0.8862
AT5G23690			Polynucleotide adenylyltransfe...		Lus10016719 [exp]	6.6	0.8807
AT4G14385			unknown protein		Lus10021187 [exp]	7.1	0.8712
AT1G04420			NAD(P)-linked oxidoreductase s...		Lus10028045 [exp]	7.7	0.8530
AT1G15390		PDF1A, ATDEF1	peptide deformylase 1A (.1)		Lus10023133 [exp]	12.0	0.8237
AT5G65820			Pentatricopeptide repeat (PPR)...		Lus10011566 [exp]	14.0	0.8524
AT1G12410		EMB3146, CLP2, ...	NUCLEAR-ENCODED CLP PROTEASE P...		Lus10028905 [exp]	15.6	0.8448
AT5G23690			Polynucleotide adenylyltransfe...		Lus10036013 [exp]	17.4	0.8583
AT1G12410		EMB3146, CLP2, ...	NUCLEAR-ENCODED CLP PROTEASE P...		Lus10004319 [exp]	21.1	0.8753
AT1G48460			unknown protein		Lus10032738 [exp]	23.2	0.8730

Compare expression of checked genes

Lus10038433 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.