Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30680 825 / 0 toprim domain-containing protein (.1) AT1G30660 325 / 1e-105 nucleic acid binding;nucleic acid binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023379 [exp] 1325 / 0 AT1G30680 855 / 0.0 toprim domain-containing protein (.1) Lus10038433 [exp] 295 / 2e-94 AT1G30680 297 / 5e-100 toprim domain-containing protein (.1) Lus10023380 [exp] 295 / 3e-93 AT1G30680 294 / 1e-97 toprim domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G461300 [exp] 959 / 0 AT1G30680 828 / 0.0 toprim domain-containing protein (.1) Potri.001G461200 [exp] 307 / 4e-98 AT1G30680 313 / 1e-100 toprim domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0413 [flax] [poplar] Toprim-like PF01751 [flax] [poplar] Toprim Toprim domain CL0023 [flax] [poplar] P-loop_NTPase PF03796 [flax] [poplar] DnaB_C DnaB-like helicase C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10038434 pacid=23158137 polypeptide=Lus10038434 locus=Lus10038434.g ID=Lus10038434.BGIv1.0 annot-version=v1.0 ATGCTTCGTCTTGCTCATTCTAACCGCTGTCGAAAGCTAGCTATTTCTCAGATGGCCTCCAAGTTCTTCCCCAAACCCACCGTACCTTCGTCCCTCCTCA TCCGTACTCCTCTTCCTTGCCTGTTTTCTTCCAGTACACGACCACGCTTCTTCCAAGTGTTTTGCTCCAAACCCAACTCTAATAAAAACCACTCTCGTTC CCTCTACTCCAATGGCCATGCCACTGTTCCTGTTCCCCCACCAGCTGATTTGACGGACGGAGTTGGCTGGAAGGGCGCCGTTTTGCGGAAACGATTGGCA GACTCTGGAATTGAAATGGATATTATAGCACCTGGTCAGTACAGTGGCTTATATTGTCCGAAGTGTGAAGGTGGTGATTCCAGGGAAAAGTCGTTCTCTA TTGTCATCAGTCCTGATGGTGGAGGAGCAACGTGGATATGTCATAGGGGTAAATGTGGATGGACTGGCGGAACAAAACTGCAGAATGTTTCGCATTCACC GTCTAGAATCCCAGTCCAACAAAATCGCAAGAAGTTAAAAAGAGAAATTACAGAGGAGAGTCTGCAGTTGAAGCCATTATGCAATGAGCTCATTGGTTAC TTCAAAGAACGGGACATATCCCGTGAAACTTTGGTGAGAAATGGTGTCATGCAAAAGGCCTACGAGAATCAGATTGTTATTGCTTTCACTTATAGGAAAA ATGGGAATCTGGTAAGCTGCAAGTATCGGGATATCAACAAGAAATTTTGGCAGGAAAAGGATACAGAAAAGATATTTTATGGGTTGGATGACATAAAAGG AGCTGATGACATTATCATTGTTGAAGGTGAAATTGACAAGCTTGCAATGGAAGAGGCTGGATTTCGTAATTGTGTTAGTGTGCCTGATGGGGCACCTCCA CTAGTCTCATCCAAGGATTTGCCCCCCGAAACCCAGGACACAAAGTATCAATACCTCTGGAATTGCAAAGAATATTTGAAACAGGCATCCCGCATCATAC TTGCTACTGATGGGGACCCTCCGGGTCAAGCATTGGCAGAAGAGCTTGCACGACGTCTTGGAAGAGAAAGGTGCTGGCGAGTCAAATGGCCAAAGAAAAA TGGAGATAGTTATTGCAAAGATGCGAATGAGGTTCTGATGTATTTGGGCCCTCAAGCTCTGAAAGACGCACTTGACAGTGCTGAATTATATCCCATCAAA GGGTTGTTCCTCTTCAGAGATTTCTTTGATGAAATCGATTCATATTATCATCAAACTCAAGGGTATCATTTTGGCGTCTCAACAGGGTGGAAGGCTTTGG ATGGGTTGTACAGTGTTTTGCCGGGAGAGTTGACTATTGTAAGTGGGGTTCCGAATTCTGGCAAGAGTGAGTGGATTGATGCACTTTTATGCAACCTTAA CAAAACTGCTGGTTGGAAATTTGCACTCTGCTCCATGGAGAACAAGGTTCGAGATCATGCCAGGAAACTAATGGAGAAACACCTTAAAACCCCGTTCTTT GATGCTCCGTATGGACAATCTGCTGAACGTCTGAGTACTGAGGAGTATGAGCGAGGGAAGCAGTGGTTAAATGATACATTCTATCTCATAAGATGTGAAG ATGATGCACTTCCAAGCATAAGATGGGTTCTTAGTCTTGCAAAGGCAGCAGTGCTAAGATACGGTGTCCGTGGGCTTGTCATTGATCCGTACAATGAACT TGATCATCAGCGTCCACCTAACATGACCGAGACGGAGTATGTAAGTCAGATGCTGACTCTGGTAAAAAGATTTGCTCAGCACCATTCATGTCATGTGTGG TTTGTTGCACATCCCAGACAGTTGCACAACTGGATTGGAGGACCCCCTAATATGTATGATATAAGCGGGAGTGCCCATTTCATAAACAAATGTGACAACG GGATTATCGTTCACCGGAACCGAAATCCTGATGCTGGCAAAGTTGATCAAGTCCAGATTTGTGTACGTAAGGTGAGAAACAAGGTAGTTGGAACCATAGG AGAAGGATACCTGTCATATAACAGGGTGACTGGGGAATACGTGGATATCGAACAAGGTCACGGCCGATAA
AA sequence Show only first row Show all	>Lus10038434 pacid=23158137 polypeptide=Lus10038434 locus=Lus10038434.g ID=Lus10038434.BGIv1.0 annot-version=v1.0 MLRLAHSNRCRKLAISQMASKFFPKPTVPSSLLIRTPLPCLFSSSTRPRFFQVFCSKPNSNKNHSRSLYSNGHATVPVPPPADLTDGVGWKGAVLRKRLA DSGIEMDIIAPGQYSGLYCPKCEGGDSREKSFSIVISPDGGGATWICHRGKCGWTGGTKLQNVSHSPSRIPVQQNRKKLKREITEESLQLKPLCNELIGY FKERDISRETLVRNGVMQKAYENQIVIAFTYRKNGNLVSCKYRDINKKFWQEKDTEKIFYGLDDIKGADDIIIVEGEIDKLAMEEAGFRNCVSVPDGAPP LVSSKDLPPETQDTKYQYLWNCKEYLKQASRIILATDGDPPGQALAEELARRLGRERCWRVKWPKKNGDSYCKDANEVLMYLGPQALKDALDSAELYPIK GLFLFRDFFDEIDSYYHQTQGYHFGVSTGWKALDGLYSVLPGELTIVSGVPNSGKSEWIDALLCNLNKTAGWKFALCSMENKVRDHARKLMEKHLKTPFF DAPYGQSAERLSTEEYERGKQWLNDTFYLIRCEDDALPSIRWVLSLAKAAVLRYGVRGLVIDPYNELDHQRPPNMTETEYVSQMLTLVKRFAQHHSCHVW FVAHPRQLHNWIGGPPNMYDISGSAHFINKCDNGIIVHRNRNPDAGKVDQVQICVRKVRNKVVGTIGEGYLSYNRVTGEYVDIEQGHGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30680			toprim domain-containing prote...		Lus10038434 [exp]	0	1
AT3G16260		TRZ4	tRNAse Z4 (.1)		Lus10025810 [exp]	1.7	0.9192
AT5G18820		Cpn60alpha2, EM...	embryo defective 3007, chapero...		Lus10038352 [exp]	3.2	0.8902
AT4G33760			tRNA synthetase class II (D, K...		Lus10037243 [exp]	3.9	0.8665
AT5G64580		EMB3144	EMBRYO DEFECTIVE 3144, AAA-typ...		Lus10033496 [exp]	4.0	0.9049
AT1G79560		EMB36, EMB156, ...	EMBRYO DEFECTIVE 36, EMBRYO DE...		Lus10031745 [exp]	4.2	0.9046
AT1G30680			toprim domain-containing prote...		Lus10023379 [exp]	6.9	0.8949
AT2G04530		CPZ, TRZ2	TRNASE Z 2, Metallo-hydrolase/...		Lus10033809 [exp]	9.5	0.8816
AT4G35130			Tetratricopeptide repeat (TPR)...		Lus10035619 [exp]	10.5	0.8607
AT5G18820		Cpn60alpha2, EM...	embryo defective 3007, chapero...		Lus10036216 [exp]	11.1	0.8410
AT5G40410			Tetratricopeptide repeat (TPR)...		Lus10005637 [exp]	11.5	0.8482

Compare expression of checked genes

Lus10038434 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.