Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30690 471 / 4e-162 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G09160 331 / 8e-106 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G72160 324 / 3e-105 Sec14p-like phosphatidylinositol transfer family protein (.1) AT3G51670 319 / 2e-104 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G22530 298 / 6e-93 PATL2 PATELLIN 2 (.1) AT1G72150 278 / 1e-86 PATL1 PATELLIN 1 (.1) AT4G08690 74 / 3e-14 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G01630 73 / 3e-14 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G39180 69 / 4e-12 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G21540 69 / 5e-12 ATSFH3 SEC14-like 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031752 [exp] 429 / 7e-144 AT1G30690 412 / 4e-137 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10023378 [exp] 399 / 7e-137 AT1G30690 247 / 1e-77 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10001542 [exp] 367 / 1e-121 AT1G72160 450 / 8e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10012219 [exp] 336 / 7e-112 AT3G51670 564 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10001269 [exp] 339 / 9e-112 AT3G51670 602 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10003552 [exp] 326 / 6e-106 AT1G30690 290 / 4e-92 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10009453 [exp] 315 / 3e-104 AT1G72160 389 / 9e-134 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10001539 [exp] 296 / 1e-96 AT1G72160 490 / 1e-173 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10031175 [exp] 276 / 5e-90 AT1G30690 273 / 2e-89 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G461400 [exp] 528 / 0 AT1G30690 497 / 4e-172 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.T011100 [exp] 367 / 1e-120 AT1G72160 454 / 6e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.004G138200 [exp] 366 / 4e-120 AT1G72160 457 / 2e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.T011101 [exp] 366 / 4e-120 AT1G72160 452 / 4e-154 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.013G106000 [exp] 360 / 1e-117 AT1G72160 457 / 6e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.005G224800 [exp] 350 / 1e-115 AT1G30690 333 / 4e-109 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.016G127700 [exp] 346 / 7e-115 AT3G51670 641 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.019G079500 [exp] 353 / 1e-114 AT1G72160 439 / 1e-148 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.013G105900 [exp] 350 / 3e-114 AT1G72160 574 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.019G079300 [exp] 349 / 8e-114 AT1G72160 545 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF03765 [flax] [poplar] CRAL_TRIO_N CRAL/TRIO, N-terminal domain CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10038435 pacid=23158231 polypeptide=Lus10038435 locus=Lus10038435.g ID=Lus10038435.BGIv1.0 annot-version=v1.0 ATGACCGCCGAGGTAATTAACGCCGCCGCCCCAGCAGCACCTCAAAAGGCAGAGGAGGTTCCCGCCGTCGACGAGACCGTCAAGGCACCGGCGGATGTGG TGGTTGATGTCTCCTCCAAGCCTGCCAAGGTAGCAGAGAAGATATCTTCCTTCAAGGAGGAAGCCAACATCTTCTCAGATCTCAAGGAATTCGAGAAGAA GGCTCTCACCAGCTTCAAATCCAAGCTCGAGGACGCCATCCTCAACAACACTCTGTTCCTCCAATCCCAGAAGCCTAAGATTGAAGAGAAGAAGACGGTC GTCGTCGAGCAATCTGTTAAGCAAGAAGAGCAGAACAAGGACACCGTTGAAATTGCAGCAGCTAAAGAAGAAAAAGAAGAACAAACTTCTGACCAAAATC CGCAAGAAGAAGAATCGGCGGCTGCTGTTGTAGATGAGAAGGAAAAAATCATCCAGGAATGCGAGAAGAAAGATGAACAAGTCGAGGAAGAAGCTGAACA GAAGGTTGACATCGTTGCTGCCGTCGACAGCGAAATCTCTCTGTGGGGAGTCCAATTGCTGCCAAGTAAAGGAGGAGAGGCGACCGACGTCGTACTGCTG AAATTCCTCCGAGCCAGAGACTTCAAGGTCAACGAAGCGTTCGAGATGCTGCGGAAGACTCTGCAATGGAGGAAGGAGAACAAAATCGATTCCATCCTGG AAGAAGATCTAGGCCAGGATCATCTCGCGGTGGCGTTCTACACCAACGGTGTAGATCGAGTGGGGCACCCTATTTTTTACAATATCTACGGAGTTTTCAA CAGCGAAGAGGTTTACTCCAAGGCATTTGGAAGTACTGTCGAGGAGGAGAAGGATAGCAGCAGTAAACAGTTTCTGAGGTGGAGGATTCAGCAGCTGGAG CAGAGTATTCAGAAGCTTGAATTGAAGCCTGGTGGCGTTGCTTCTCTGCTTCAGATCAGTGACCTTAAGAATTCCCCTCCGCCATCCAAGAAAGAGCTCA GGACCGCCATGAAACAGGCTGTGGGGATCTTGCAGGACAATTACCCTGAATTGGTCGCCAGAAATATATTCATCAATGTGCCGTTCTGGTATTACGCAAT GAACGCCCTGCTATCACCATTCCTAACCCAGAGGACAAGGAGCAAATTCGTAGTAGCTCGCCCAGCCAAGGTAACCGAAACCTTACTCAAGTACATTCCG GTCGAGCAAGTCCCGGCCAAGTACGGCGGATTCAAGAGGGTGAACGACTACGAGTTCGGAGACGAGGAAGTAATGGAGGCTTTTGTGAAAGCTGGGTCGA CGGAGAGCATAGAGATTCCGGCGACGGAGGTGGGCGGTGGAACACTGCTGTGGGATGTGACGGTGGTGGGATGGGAAGTGAGGTACAAGGAAGAGTTCGT TCCAGCTGATGCAGGCTCTTACACCATCATCATTCAGAAGGAGAAGAAGATCGGTGCTGGGGAAGAGGCGATTCGGAACAGTTACCGGAACGGTGAGGCT GGGAAAGTTGTGCTGACGGTGGAGAACTGTTCTAGCAAGAAGAAGAGGGTTCTGTACAGGTACAAAACCCAGAAGAGTGCTTAA
AA sequence Show only first row Show all	>Lus10038435 pacid=23158231 polypeptide=Lus10038435 locus=Lus10038435.g ID=Lus10038435.BGIv1.0 annot-version=v1.0 MTAEVINAAAPAAPQKAEEVPAVDETVKAPADVVVDVSSKPAKVAEKISSFKEEANIFSDLKEFEKKALTSFKSKLEDAILNNTLFLQSQKPKIEEKKTV VVEQSVKQEEQNKDTVEIAAAKEEKEEQTSDQNPQEEESAAAVVDEKEKIIQECEKKDEQVEEEAEQKVDIVAAVDSEISLWGVQLLPSKGGEATDVVLL KFLRARDFKVNEAFEMLRKTLQWRKENKIDSILEEDLGQDHLAVAFYTNGVDRVGHPIFYNIYGVFNSEEVYSKAFGSTVEEEKDSSSKQFLRWRIQQLE QSIQKLELKPGGVASLLQISDLKNSPPPSKKELRTAMKQAVGILQDNYPELVARNIFINVPFWYYAMNALLSPFLTQRTRSKFVVARPAKVTETLLKYIP VEQVPAKYGGFKRVNDYEFGDEEVMEAFVKAGSTESIEIPATEVGGGTLLWDVTVVGWEVRYKEEFVPADAGSYTIIIQKEKKIGAGEEAIRNSYRNGEA GKVVLTVENCSSKKKRVLYRYKTQKSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10038435 [exp]	0	1
AT3G28180		ATCSLC4, CSLC4,...	CELLULOSE-SYNTHASE LIKE C4, Ce...		Lus10039440 [exp]	3.5	0.9409
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10001178 [exp]	4.4	0.9445
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10010949 [exp]	5.3	0.9439
AT4G02320			Plant invertase/pectin methyle...		Lus10008203 [exp]	6.0	0.9402
AT2G19880			Nucleotide-diphospho-sugar tra...		Lus10012951 [exp]	6.7	0.9222
AT5G63800		MUM2, BGAL6	MUCILAGE-MODIFIED 2, beta-gala...		Lus10020875 [exp]	7.1	0.9213
AT3G20300			Protein of unknown function (D...		Lus10009722 [exp]	8.1	0.9323
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10030899 [exp]	8.4	0.9112
AT3G16850			Pectin lyase-like superfamily ...		Lus10037714 [exp]	9.2	0.9187
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Lus10021845 [exp]	10.2	0.9345

Compare expression of checked genes

Lus10038435 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.