Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20820 502 / 2e-174 FAD-binding Berberine family protein (.1) AT5G44440 480 / 1e-165 FAD-binding Berberine family protein (.1) AT5G44410 455 / 9e-156 FAD-binding Berberine family protein (.1) AT1G30760 446 / 3e-152 FAD-binding Berberine family protein (.1) AT1G30700 443 / 3e-151 FAD-binding Berberine family protein (.1) AT1G34575 441 / 2e-150 FAD-binding Berberine family protein (.1) AT1G30710 434 / 9e-148 FAD-binding Berberine family protein (.1) AT1G11770 433 / 3e-147 FAD-binding Berberine family protein (.1) AT5G44400 432 / 1e-146 FAD-binding Berberine family protein (.1) AT5G44360 430 / 4e-146 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032943 [exp] 570 / 0 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10012641 [exp] 520 / 0 AT5G44440 518 / 2e-180 FAD-binding Berberine family protein (.1) Lus10001965 [exp] 506 / 5e-176 AT5G44390 454 / 2e-155 FAD-binding Berberine family protein (.1) Lus10039682 [exp] 506 / 2e-175 AT5G44440 481 / 9e-166 FAD-binding Berberine family protein (.1) Lus10026775 [exp] 496 / 4e-172 AT5G44390 448 / 5e-153 FAD-binding Berberine family protein (.1) Lus10008410 [exp] 484 / 6e-168 AT5G44390 436 / 8e-149 FAD-binding Berberine family protein (.1) Lus10023376 [exp] 471 / 1e-165 AT4G20820 231 / 3e-72 FAD-binding Berberine family protein (.1) Lus10023363 [exp] 452 / 4e-155 AT2G34790 504 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10038446 [exp] 450 / 7e-154 AT4G20860 520 / 0.0 FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G440700 [exp] 583 / 0 AT4G20820 552 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461800 [exp] 574 / 0 AT5G44440 516 / 1e-179 FAD-binding Berberine family protein (.1) Potri.001G461500 [exp] 573 / 0 AT4G20820 519 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162884 [exp] 573 / 0 AT4G20820 527 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462100 [exp] 572 / 0 AT4G20820 521 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162968 [exp] 572 / 0 AT4G20820 525 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462000 [exp] 572 / 0 AT5G44440 520 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162900 [exp] 571 / 0 AT4G20820 526 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461900 [exp] 570 / 0 AT4G20820 545 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461700 [exp] 568 / 0 AT4G20820 545 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF08031 [flax] [poplar] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Lus10038436 pacid=23158341 polypeptide=Lus10038436 locus=Lus10038436.g ID=Lus10038436.BGIv1.0 annot-version=v1.0 ATGGCTGAATTTGTGCTCCTACTAGTACTCTTCATTCTTCTGCACGTAACAACATCAACCCAACCTCCCTACCAAGATTTCACCCAATGCCTCCAATCCA ATGAACCCGACATTCCCACAAACCTCATCTACACTCAAAACACACCTTCCTTCTCATCCTTACTACAATCCTCCATTCGAAACCCGAGGTTCGAAACCAC CGCCACACCGAAGCCTTCATTTATCATCACGCCCTTCAAAATCTCCCACATCCAATCCGTAATCCTCTGCTCCCGATCTCACGGCTTCCAAATTAGAGTC CGGAGTGGCGGGCATGACTACGAGGGACTATCTTACACCTCTGCTTCCCCTCTCGGACTCAACTTTCTCGTAATCGACCTCAGCAACATGAGGTCCGTTC GTGTGGACACTCTGGCCAGAACAGCATGGGCTCAGGCGGGGGCAACCTTAGGGGAGCTCTACTACGCCATTGCGTTCCATAGCAGAACCCTCGCGTTCCC CGCCGGGATGTGGCCCACCGTCGGCCTAGGGGGCCACATCAGCGGCGGTGGGTACGGGAGTCTGCTCCGCAAACACGGGATCGCTGCGGACCACGTGGTT GATGCCCAATTGGTCGATGCGCAGGGTAGACTCCACGATCGAGCTTCAATGGGTGAGGATTTGTTCTGGGCCATCCGTGGAGGGGGAGGAAACACATTTG GAATCGTCGTAGCTTGGAAACTCAATTTGGTCGCGGTTCCTCCCACGGTTACTTTATTTTCTATCAAGAGAAATCAGAACGTGACCAAGTTGTTCCACCG CTGGCAATACGTGGGCGACAAGTTTTCCGACGATCTAATCATCATGCCGTCCATAAGCCGATTCAACAACTCGATTGTAATATCGTTTGATTCACTGTTC CTAGGGAAAACCAACACTCTGCTTTCCCAAATGGAGCAGAGCTTCCCAGAACTCGAGATCTCGAAAACCGATTGCATAGAGACGACTTGGATTCAATCGA TTCTCTACTTCTCCGGTTTCCAGCTCGACACGCCATTGGAGGTACTTCTCGACCGAAACATCACAATTTCGAGAACAGGACGGTTCAAAGCGAAATCAGA CTACGTGCAGAGTCCAATCCCCGAACCAGAGCTCGAAAAGATATGGCGTAAGCTGTACGAAGTCGAGGACGATGCGATTTCGTTGGAGATAATGCCACAC GGAGGAAGAATGAGCGAGATCGGGGAGTCGAGTATTCCGTATCCGCACAGAGCTGGGAACATATACAAGATTCAGTACTACATGTACTGGTACGAAGGAG GGGAAGAAGCTGCCGAGAGAAACATTGGGTGGGTGAGGAAGTTCTACGATTTCATGGAACCTTATGTTTCAAAGAACCCGCGATCTGCTTACGTGAATTC CAGAGATCTTGATTTGGGGATGAATGGAAAGGGGTACGAGAAGGCGAGGATGTGGGGGGTGAAGTATTTCAAGAGTAATTTTGATAAGTTGGTGAGGGTG AAGACTGCGGTGGATCCTGAAGATTTCTTCAGGAATGAGCAGAGTATTCCGCCATTTCCAAATCGTATGGAGGTTGTTGATCAGTGA
AA sequence Show only first row Show all	>Lus10038436 pacid=23158341 polypeptide=Lus10038436 locus=Lus10038436.g ID=Lus10038436.BGIv1.0 annot-version=v1.0 MAEFVLLLVLFILLHVTTSTQPPYQDFTQCLQSNEPDIPTNLIYTQNTPSFSSLLQSSIRNPRFETTATPKPSFIITPFKISHIQSVILCSRSHGFQIRV RSGGHDYEGLSYTSASPLGLNFLVIDLSNMRSVRVDTLARTAWAQAGATLGELYYAIAFHSRTLAFPAGMWPTVGLGGHISGGGYGSLLRKHGIAADHVV DAQLVDAQGRLHDRASMGEDLFWAIRGGGGNTFGIVVAWKLNLVAVPPTVTLFSIKRNQNVTKLFHRWQYVGDKFSDDLIIMPSISRFNNSIVISFDSLF LGKTNTLLSQMEQSFPELEISKTDCIETTWIQSILYFSGFQLDTPLEVLLDRNITISRTGRFKAKSDYVQSPIPEPELEKIWRKLYEVEDDAISLEIMPH GGRMSEIGESSIPYPHRAGNIYKIQYYMYWYEGGEEAAERNIGWVRKFYDFMEPYVSKNPRSAYVNSRDLDLGMNGKGYEKARMWGVKYFKSNFDKLVRV KTAVDPEDFFRNEQSIPPFPNRMEVVDQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20820			FAD-binding Berberine family p...		Lus10038436 [exp]	0	1
					Lus10033897 [exp]	2.2	0.9477
AT5G61680			Pectin lyase-like superfamily ...		Lus10034893 [exp]	4.2	0.9218
AT1G24405			unknown protein		Lus10037061 [exp]	4.7	0.9472
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10022471 [exp]	6.6	0.9418
AT1G24405			unknown protein		Lus10036923 [exp]	6.9	0.9457
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10016775 [exp]	7.7	0.9323
AT1G49960			Xanthine/uracil permease famil...		Lus10033773 [exp]	10.0	0.9365
					Lus10034812 [exp]	13.0	0.9304
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10013480 [exp]	13.3	0.9045
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10001293 [exp]	13.6	0.8763

Compare expression of checked genes

Lus10038436 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.