Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26380 469 / 2e-161 FAD-binding Berberine family protein (.1) AT4G20800 468 / 6e-161 FAD-binding Berberine family protein (.1) AT1G26390 453 / 5e-155 FAD-binding Berberine family protein (.1) AT1G26420 451 / 2e-154 FAD-binding Berberine family protein (.1) AT1G34575 443 / 4e-151 FAD-binding Berberine family protein (.1) AT1G26400 432 / 6e-147 FAD-binding Berberine family protein (.1) AT1G26410 430 / 1e-145 FAD-binding Berberine family protein (.1) AT1G30710 428 / 2e-145 FAD-binding Berberine family protein (.1) AT2G34810 424 / 1e-143 FAD-binding Berberine family protein (.1) AT1G30720 422 / 4e-143 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023374 [exp] 827 / 0 AT1G26380 500 / 5e-174 FAD-binding Berberine family protein (.1) Lus10021289 [exp] 724 / 0 AT1G26380 486 / 4e-168 FAD-binding Berberine family protein (.1) Lus10038439 [exp] 446 / 4e-152 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10035466 [exp] 444 / 1e-151 AT1G30700 585 / 0.0 FAD-binding Berberine family protein (.1) Lus10023375 [exp] 429 / 3e-145 AT1G30700 606 / 0.0 FAD-binding Berberine family protein (.1) Lus10009009 [exp] 420 / 6e-142 AT1G30700 534 / 0.0 FAD-binding Berberine family protein (.1) Lus10023363 [exp] 417 / 2e-141 AT2G34790 504 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10032943 [exp] 417 / 9e-141 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10038436 [exp] 406 / 1e-136 AT4G20820 508 / 1e-176 FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G459100 [exp] 563 / 0 AT4G20800 623 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G155900 [exp] 560 / 0 AT4G20800 617 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459500 [exp] 538 / 0 AT4G20800 559 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459200 [exp] 523 / 0 AT4G20800 606 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G156000 [exp] 520 / 0 AT4G20800 597 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158400 [exp] 492 / 4e-170 AT1G34575 649 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G470100 [exp] 476 / 5e-164 AT1G30700 543 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158300 [exp] 469 / 2e-161 AT1G30700 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158500 [exp] 464 / 2e-159 AT1G01980 671 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G163000 [exp] 454 / 2e-155 AT4G20820 532 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF08031 [flax] [poplar] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Lus10038437 pacid=23158450 polypeptide=Lus10038437 locus=Lus10038437.g ID=Lus10038437.BGIv1.0 annot-version=v1.0 ATGTCGTCGATCATCTTTATCCCTCTCTTCCTCTTCCTCTCATTCACTTCTTCTTCTTCATCCTCCTCCCCAATCGAGTCCTTCCTGCAATGTCTGAAGC AACGCAACGATGGCTCCGACGCCGTTTTGTACCTCCCAAAGAACTCCTCCTTCTCCGGCGTACTAAACGCCTACATCCGTAACCGCAGATTCATGGGGCA TACCACTGCTAAACCACTAGCCATAGTCACCCCCACGCGCTACTCGCACGTGCGGGCCACGGTCCTCTGTTCCAAGCTCAACAGACTGCAGATCAGGACT CGCAGTGGCGGCCACGACTACGAAGGCCTTTCTTACCGGTCTCCTTCTCCGTTCGTCCTCCTTGACATGAACAAACTGCGGTCAATCGACATCGATCTGG CTTCTGAGACCGCTTGGGTCGAATCAGGAGCTACATTGGGCGAGCTTTACTACTCAATAGTCAACAAGAGCAAAACCCACGCCTTTCCTGCTGGGGTTCG CCCCACCATCGGCGTTGGCGGACACATTGCCGGCGGCGGGTATGGTAATTTATTGCGCAAATACGGTCTCTCCATCGATAACGTCCTCGACGCGCGCGTG GTGGATGCTGCAGGAAATATCCTTAACAGATCAACAATGGGTGATTTGTTCTGGGCGATTCGAGGTGGCGGCGGAGCCAGCTTTGGAGTTATCCTTTCGT GGAAGATTAAGCTCGTTAGGGTTCCGAAAATCGTCACCACTTTCAACGTGAAGCGGAAATTGGAGGAAGGAGCGACAAACATCTTTTACAGGTGGCAACA TGTGTCGACCAATCTGAGCAGGGACCTTTTTATAAGAGCCATGCCGCTAGTTGTGGCCGTCGGAGGGGAGGGTGGAGGGAAGAAGGAGGTTCAAATCTCC TTCGTTGGAGAGTATTTAGGACGATCGAAGGAACTCGTTCCCTTGCTGAATAAAAGCTTCCCCGAATTGGGTTTCAAGGCGGCAGATGGTGTAGAAATGA GTTGGGTCGAGTCCGTCCTGTCGTGGGCCATGCTTCCAACAAGACCACTGGAGTTGTTGTTGAATAGAAAATCCAAACCCAAGAATTTCAAGGGCAAATC TGATTACGTGACACAGGTGATTCCCAAGGAAGCTCTGCCGGGGATATGGGACGCGATTTTGAAAACTGGCGGGGGATACATGCAGTGGAATCCTTACGGT GGGAGGATGGCGGTGATTCCGGCTAACAAGACGGCATACGCTCACAGAGCTGGATATCTGTTCAAAGTGCAATATTATTTGAGCTGGAATGAAGATGGAG AAGAAGCGGAGGCGAAACACGTCGCGGCGGGGGGGGGGGTACATGAAGCCGTGACCCCGTACGCGACCAAGAAGCCGAGGGAGGCGTTTTTAGATTACAG GGACCTTGCCAATGGGGAGACTTCTGTTGACCAGCCTGATTGGGAGAAGGCCAAAGTGTACGGTGAGAAGTATTTTAAGGGTCATTTTGAAAGACTGTCA AAGATTAAACGCCAATTCGATCCTGAGAATTTCTTTAGGGACCAACAAAGTATTCCTCCTTTCCCTGACTACAAGTTCCATAACCGAGAACCGATGACTT AA
AA sequence Show only first row Show all	>Lus10038437 pacid=23158450 polypeptide=Lus10038437 locus=Lus10038437.g ID=Lus10038437.BGIv1.0 annot-version=v1.0 MSSIIFIPLFLFLSFTSSSSSSSPIESFLQCLKQRNDGSDAVLYLPKNSSFSGVLNAYIRNRRFMGHTTAKPLAIVTPTRYSHVRATVLCSKLNRLQIRT RSGGHDYEGLSYRSPSPFVLLDMNKLRSIDIDLASETAWVESGATLGELYYSIVNKSKTHAFPAGVRPTIGVGGHIAGGGYGNLLRKYGLSIDNVLDARV VDAAGNILNRSTMGDLFWAIRGGGGASFGVILSWKIKLVRVPKIVTTFNVKRKLEEGATNIFYRWQHVSTNLSRDLFIRAMPLVVAVGGEGGGKKEVQIS FVGEYLGRSKELVPLLNKSFPELGFKAADGVEMSWVESVLSWAMLPTRPLELLLNRKSKPKNFKGKSDYVTQVIPKEALPGIWDAILKTGGGYMQWNPYG GRMAVIPANKTAYAHRAGYLFKVQYYLSWNEDGEEAEAKHVAAGGGVHEAVTPYATKKPREAFLDYRDLANGETSVDQPDWEKAKVYGEKYFKGHFERLS KIKRQFDPENFFRDQQSIPPFPDYKFHNREPMT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26380			FAD-binding Berberine family p...		Lus10038437 [exp]	0	1
AT5G22660			FBD, F-box, Skp2-like and Leuc...		Lus10017530 [exp]	11.5	0.8114
AT1G73380			unknown protein		Lus10031887 [exp]	12.8	0.8005
AT5G20350		TIP1	TIP GROWTH DEFECTIVE 1, Ankyri...		Lus10008037 [exp]	20.9	0.8150
AT4G28610	GARP	ATPHR1, PHR1	phosphate starvation response ...		Lus10022886 [exp]	21.4	0.7739
AT2G39910			ARM repeat superfamily protein...		Lus10040233 [exp]	28.5	0.7488
AT4G34810			SAUR-like auxin-responsive pro...		Lus10042377 [exp]	33.7	0.7342
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10036834 [exp]	35.6	0.7528
AT3G25430			Polynucleotidyl transferase, r...		Lus10002539 [exp]	37.1	0.7488
AT1G60670			Protein of unknown function (D...		Lus10030566 [exp]	41.0	0.7430
AT5G57370			unknown protein		Lus10006974 [exp]	46.5	0.7786

Compare expression of checked genes

Lus10038437 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.