Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30700 538 / 0 FAD-binding Berberine family protein (.1) AT1G34575 500 / 8e-174 FAD-binding Berberine family protein (.1) AT1G30710 496 / 5e-172 FAD-binding Berberine family protein (.1) AT4G20840 494 / 4e-171 FAD-binding Berberine family protein (.1) AT4G20800 484 / 2e-167 FAD-binding Berberine family protein (.1) AT1G11770 483 / 9e-167 FAD-binding Berberine family protein (.1) AT1G26420 478 / 6e-165 FAD-binding Berberine family protein (.1) AT1G30760 478 / 7e-165 FAD-binding Berberine family protein (.1) AT4G20830 476 / 5e-164 FAD-binding Berberine family protein (.1.2) AT1G30730 474 / 2e-163 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035466 [exp] 522 / 0 AT1G30700 585 / 0.0 FAD-binding Berberine family protein (.1) Lus10023375 [exp] 499 / 5e-173 AT1G30700 606 / 0.0 FAD-binding Berberine family protein (.1) Lus10009009 [exp] 493 / 8e-171 AT1G30700 534 / 0.0 FAD-binding Berberine family protein (.1) Lus10032943 [exp] 493 / 8e-171 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10023363 [exp] 484 / 2e-167 AT2G34790 504 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10023365 [exp] 478 / 6e-165 AT1G11770 520 / 0.0 FAD-binding Berberine family protein (.1) Lus10018119 [exp] 477 / 2e-164 AT2G34790 641 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10036147 [exp] 477 / 3e-164 AT2G34790 626 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10023361 [exp] 476 / 1e-163 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G470100 [exp] 706 / 0 AT1G30700 543 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158300 [exp] 591 / 0 AT1G30700 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158400 [exp] 587 / 0 AT1G34575 649 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G440700 [exp] 569 / 0 AT4G20820 552 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462200 [exp] 552 / 0 AT1G30700 647 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462600 [exp] 550 / 0 AT1G01980 658 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158500 [exp] 548 / 0 AT1G01980 671 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459500 [exp] 543 / 0 AT4G20800 559 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158100 [exp] 539 / 0 AT5G44440 519 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459100 [exp] 538 / 0 AT4G20800 623 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF08031 [flax] [poplar] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Lus10038439 pacid=23158131 polypeptide=Lus10038439 locus=Lus10038439.g ID=Lus10038439.BGIv1.0 annot-version=v1.0 ATGGCAAGCCCTGCTTCTGCTGCTCCACCGGCAGATCCAACTCAACAGATGTATCTCAAATGCCTCTCCGATAATTCATCATCCCCAATCGATCAAGTCG TCCACTTCCCAACCACCCAACTCTACACTTCAATCCTCAAATCCAACATCAGAAACCTCGTTTTCGCCTCCGATTCAACTCCCCGGCCCCTCTTCATCGT AGCTCCAACCCACCTCTCCCACATCCAATCCACTATTCTCTGCTGCAAGACCCACTCCATCCAGCTCAGAATCCGCAGCGGCGGCCACGATTACGAAGGC CTCTCCTACGTCTCCTCCTCCCCTTTCGTCCTCCTCGATCTCTGCAATTACAACTCCGTCGCCGTCGACGTCGATTCCGAGACTGCTTGGGTCGACTCTG GCGCCACTCTCGGCGAGCTTTACCACCAGATCGCCTCCATGAGCAGGATCCACGGCTTCCCCGGCGGGATTTGTCCCACCGTCGGCGTCGGCGGGTTTTT CAGCGGAGCTGGGTACGGCAACTTGATGCGGAAGTACGGACTTTCGGTGGATAATGTTCTGGACGCGATTGTCGTGGATGCCGATGCTAGAGTTCTGGAT AGGGAATCCATGGGGGAGGATTTGTTTTGGGCGATTAACGGTGGCGGCGGAGCTAGCTTCGCCGTTATCGTGTCGTGGAAAATTAGACTCGTCAACGTTC CGGAAAACGTCACCGTTTTCAGAGTCGAGCGGACTTTGGAGCAAGGAGCGTCCGACGTCGTTTACAGATGGCAGCTCGTCGCTGCTGAAAAATTACACAA TGACGTGTTCATTAGAGTCGTGTTGATTCCGGTGGCAAAACACGGCGGAGGAGGAGAATCTGAATCTTTGACGGTCAAAGCGAAATTCAATGCTCTGTTC CTGGGAAGCCCAGAGAGGCTGGTGGGGTTGATGGATGAACAATTTCCAGAACTGGGGTTGACTCGGAAGGACTGTTTGGAAATGAGCTGGATTGAATCGG TTCTATTTTGGTCTAATTACCCGGCCGGAACATCCTCGGAGGTTCTTCTGGAGAGGCATCCGAATCCTGAGAAATTCCTGAAGAAGAAATCTGATTACGT TCTTGAACCGATTTCGAAAGCCGGGCTGGACGGAATCTGGAAGAAGATGATCGTTCTCCGGAAACCGATCATGGCATTCAACCCGTACGGAGGGAAGATG TGGGAGATTGGAGAAAGGGAGACACCATTCCCGCACAGAGCAGGGAATCTGTACAAGATTCAGTACACTGTAACATGGGAAGAGGAAGCGAAAGAGGCAA TGCGGGAGAATGCTGATAGGATAAGGAGTTTGTACGAGTTTATGACGCCGTTTGTGTCGAATTTGCCGAGGTGTTCGTATCTGAATTACAGAGATGTGGA GATCGGGGTGAACGGTGAGGGTGGGAATTCGAGTTATGAGCAAGGTTTGGTTTGGGGGGAGAAGTATTTCAAGGGGAATTTTAAGAGGCTGGTTCAAGTG AAGAGCAAGGTGGATCCTGGGAATTTCTTCAGATATGAACAAAGCATTCCTGTAATGGATCCAAAATGCTGTTGA
AA sequence Show only first row Show all	>Lus10038439 pacid=23158131 polypeptide=Lus10038439 locus=Lus10038439.g ID=Lus10038439.BGIv1.0 annot-version=v1.0 MASPASAAPPADPTQQMYLKCLSDNSSSPIDQVVHFPTTQLYTSILKSNIRNLVFASDSTPRPLFIVAPTHLSHIQSTILCCKTHSIQLRIRSGGHDYEG LSYVSSSPFVLLDLCNYNSVAVDVDSETAWVDSGATLGELYHQIASMSRIHGFPGGICPTVGVGGFFSGAGYGNLMRKYGLSVDNVLDAIVVDADARVLD RESMGEDLFWAINGGGGASFAVIVSWKIRLVNVPENVTVFRVERTLEQGASDVVYRWQLVAAEKLHNDVFIRVVLIPVAKHGGGGESESLTVKAKFNALF LGSPERLVGLMDEQFPELGLTRKDCLEMSWIESVLFWSNYPAGTSSEVLLERHPNPEKFLKKKSDYVLEPISKAGLDGIWKKMIVLRKPIMAFNPYGGKM WEIGERETPFPHRAGNLYKIQYTVTWEEEAKEAMRENADRIRSLYEFMTPFVSNLPRCSYLNYRDVEIGVNGEGGNSSYEQGLVWGEKYFKGNFKRLVQV KSKVDPGNFFRYEQSIPVMDPKCC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30700			FAD-binding Berberine family p...		Lus10038439 [exp]	0	1
AT3G10910			RING/U-box superfamily protein...		Lus10022743 [exp]	2.2	0.8327
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10027744 [exp]	4.0	0.8027
AT5G47740			Adenine nucleotide alpha hydro...		Lus10019487 [exp]	4.5	0.8010
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10018674 [exp]	4.9	0.8107
AT1G64690		BLT	BRANCHLESS TRICHOMES, branchle...		Lus10017339 [exp]	6.3	0.7947
AT1G67050			unknown protein		Lus10009160 [exp]	9.3	0.8032
AT1G69080			Adenine nucleotide alpha hydro...		Lus10036814 [exp]	9.8	0.7748
AT1G64690		BLT	BRANCHLESS TRICHOMES, branchle...		Lus10001665 [exp]	12.4	0.7855
AT5G44005			unknown protein		Lus10008220 [exp]	12.6	0.7901
AT3G50780			unknown protein		Lus10022484 [exp]	12.7	0.7946

Compare expression of checked genes

Lus10038439 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.