Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11770 402 / 8e-135 FAD-binding Berberine family protein (.1) AT1G01980 392 / 5e-131 ATSEC1A FAD-binding Berberine family protein (.1) AT4G20840 382 / 4e-127 FAD-binding Berberine family protein (.1) AT4G20830 370 / 2e-122 FAD-binding Berberine family protein (.1.2) AT1G30740 364 / 3e-120 FAD-binding Berberine family protein (.1) AT1G30700 334 / 2e-108 FAD-binding Berberine family protein (.1) AT1G34575 322 / 5e-104 FAD-binding Berberine family protein (.1) AT1G30710 322 / 7e-104 FAD-binding Berberine family protein (.1) AT1G30720 313 / 1e-100 FAD-binding Berberine family protein (.1) AT1G26380 301 / 1e-95 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023366 [exp] 615 / 0 AT1G11770 490 / 2e-171 FAD-binding Berberine family protein (.1) Lus10038439 [exp] 353 / 9e-116 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10023365 [exp] 343 / 8e-112 AT1G11770 520 / 0.0 FAD-binding Berberine family protein (.1) Lus10035466 [exp] 333 / 3e-108 AT1G30700 585 / 0.0 FAD-binding Berberine family protein (.1) Lus10023375 [exp] 330 / 8e-107 AT1G30700 606 / 0.0 FAD-binding Berberine family protein (.1) Lus10009009 [exp] 314 / 1e-100 AT1G30700 534 / 0.0 FAD-binding Berberine family protein (.1) Lus10023361 [exp] 294 / 2e-92 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10032943 [exp] 293 / 2e-92 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10038436 [exp] 290 / 2e-91 AT4G20820 508 / 1e-176 FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G462600 [exp] 452 / 2e-154 AT1G01980 658 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158500 [exp] 440 / 1e-149 AT1G01980 671 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G470100 [exp] 368 / 2e-121 AT1G30700 543 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158300 [exp] 363 / 8e-120 AT1G30700 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158400 [exp] 350 / 9e-115 AT1G34575 649 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462200 [exp] 350 / 2e-114 AT1G30700 647 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462400 [exp] 338 / 6e-110 AT1G30700 647 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G440700 [exp] 338 / 8e-110 AT4G20820 552 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461900 [exp] 332 / 2e-107 AT4G20820 545 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162666 [exp] 329 / 2e-106 AT5G44440 506 / 6e-176 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0277 [flax] [poplar] FAD-oxidase_C PF08031 [flax] [poplar] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Lus10038440 pacid=23158490 polypeptide=Lus10038440 locus=Lus10038440.g ID=Lus10038440.BGIv1.0 annot-version=v1.0 ATGGGGGAAGATCTATTCTGGGCGATTCGAGGAGGCGGTGGTGCAAGTTTCGGAGTCGTAATCGCTTACAAGATTAAACTCGTTCTGGTTCCGGCGACGG TTACTGTTTTCCGAGTGGAAAAGTATCAAGAACAGAACGCAACGGATATGGTTTACAAATGGCAGTTCGTGGCTCCGAAAACGACGGACGATCTCTTCAT GAGGATGCTGTTACAGCCAGTGAGCTCCAAGACGAAGAAAGGAACACTCACGGTGAGAGCTTCGATTCTGGCGGAGTATCTGGGCACCGCCGACACACTG GTGGCGTTGATGAGTAACGAATTTCCCGAATTGGGTCTGAAGAAATCAGATTGTTTGGAAATGAGCTGGATTCAATCGGTTCTATGGTGGGGATTGAACA ACAACCAGACGAATCCAGAAGTGCTGACGAGCAGAGTGCCGGAATCGGTCAATTTCGGGAAGAGGAAATCGGATTACGTCCGGAATCCGATTTCGAAACC GAATCTGGAGTGGATTTGGAAGAAGATGGTTGAGTCAGGGAAGACAGGGTTCGTGTTCAACCCATACGGCGGGAGGATGGACGAAATTGGGGAAACGGAG ACGCCGTTTCCTCACCGGAAGGGGAATCTGTGGAAGATTCAGTACTCAATAAGTTGGAAAGATGCAGGGGAGAAGGCAGAGAAGGATTACTTGAGTCAGA TCAGGAGGATTTACAGTTACATGACGCCGTTCGTGAGCAAGAATCCGAGGGGTGCGTATTTGAATTACAGGGATTTGGATATTGGGACCGGGCAGCCTGG GAAAGATAGCTACAATGATGGGAAAGTTTATGGTGATAAGTACTTCACTGTTAACTTTGATAGGTTGGTGAAAGTGAAGACTGCTGTGGATCCTGGTAAT TTCTTTTGGAATGAACAGAGCATCCCCGTTCTTCCAAGAACCGTCACTGTTTTCGACAAGGAAAAGGATCCATCGGAGAGCTTGTCCGATTTCGTGTACC GGTGGCAGTTTGTAGCTCCGAACGCTAGCAATGATTTGTTCATGAGGCTACACTTGTCTCAAACGACGGCTTCGATTCAAGCATTGTACTTGGGAAAAGC CGACGAGGTTGTATCCTTGTTGAATAAGGATTTCCCTGAACTGAGATTAACTACGGAGGATTGTAAGGAAATGAGCTGGATTCAATCAGTGTTGTGGTAC GGAACTCCGGACTACGGGAAATCTCCGGATGCACTTCTGAATCGGTACACGGTCAGCCCATCCAATCCAGGCAAATCCGCCAAGAGGAAGTCCGATTTCG TGGTGAATCCGGTCAGCAGAGAAGGGGTGGACCGGATTATAAACCGGTTGGTCCAATTGCCGAAAATTAAGATGACATTGAGTCCGTACGGAGGAAAAGT GAGCGAGATTCCGGAATGGAAAGGTCTGTTTCCGCACAGGAAAGGGAACCTGTACATGGGTGCCTACGTCGGGAATTGGGACGCCAGGGGAGGAGGCTGC AGAAGGCGTGGTGAGCGAGTTAAGGAGTATGTACGATTATATGGCCGAGTTCGTGTTGAGGAATCCGAGGAGGGCGTACTTGAACTACCGGGATCTCGAC ATTGGGAAGATGGAGCCTGGGGATGGTTATGA
AA sequence Show only first row Show all	>Lus10038440 pacid=23158490 polypeptide=Lus10038440 locus=Lus10038440.g ID=Lus10038440.BGIv1.0 annot-version=v1.0 MGEDLFWAIRGGGGASFGVVIAYKIKLVLVPATVTVFRVEKYQEQNATDMVYKWQFVAPKTTDDLFMRMLLQPVSSKTKKGTLTVRASILAEYLGTADTL VALMSNEFPELGLKKSDCLEMSWIQSVLWWGLNNNQTNPEVLTSRVPESVNFGKRKSDYVRNPISKPNLEWIWKKMVESGKTGFVFNPYGGRMDEIGETE TPFPHRKGNLWKIQYSISWKDAGEKAEKDYLSQIRRIYSYMTPFVSKNPRGAYLNYRDLDIGTGQPGKDSYNDGKVYGDKYFTVNFDRLVKVKTAVDPGN FFWNEQSIPVLPRTVTVFDKEKDPSESLSDFVYRWQFVAPNASNDLFMRLHLSQTTASIQALYLGKADEVVSLLNKDFPELRLTTEDCKEMSWIQSVLWY GTPDYGKSPDALLNRYTVSPSNPGKSAKRKSDFVVNPVSREGVDRIINRLVQLPKIKMTLSPYGGKVSEIPEWKGLFPHRKGNLYMGAYVGNWDARGGGC RRRGERVKEYVRLYGRVRVEESEEGVLELPGSRHWEDGAWGWL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11770			FAD-binding Berberine family p...		Lus10038440 [exp]	0	1
AT4G09670			Oxidoreductase family protein ...		Lus10001327 [exp]	6.7	0.8439
AT2G47650		UXS4	UDP-xylose synthase 4 (.1.2)		Lus10003605 [exp]	7.2	0.8212
AT4G09670			Oxidoreductase family protein ...		Lus10013633 [exp]	7.7	0.8508
AT2G18840			Integral membrane Yip1 family ...		Lus10025478 [exp]	8.2	0.8607
AT2G16890			UDP-Glycosyltransferase superf...		Lus10022221 [exp]	9.5	0.8117
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10017102 [exp]	14.3	0.8143
AT4G16380			Heavy metal transport/detoxifi...		Lus10039073 [exp]	15.1	0.8213
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10025796 [exp]	19.9	0.8323
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10016960 [exp]	21.2	0.8144
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10043103 [exp]	22.4	0.8314

Compare expression of checked genes

Lus10038440 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.