Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38940 222 / 6e-74 RmlC-like cupins superfamily protein (.1) AT3G04200 220 / 4e-73 RmlC-like cupins superfamily protein (.1) AT5G38960 220 / 5e-73 RmlC-like cupins superfamily protein (.1) AT3G05950 220 / 6e-73 RmlC-like cupins superfamily protein (.1) AT5G38930 218 / 4e-72 RmlC-like cupins superfamily protein (.1) AT5G39110 217 / 5e-72 RmlC-like cupins superfamily protein (.1) AT5G39120 217 / 8e-72 RmlC-like cupins superfamily protein (.1) AT5G39130 216 / 1e-71 RmlC-like cupins superfamily protein (.1) AT4G14630 216 / 1e-71 GLP9 germin-like protein 9 (.1) AT5G39150 216 / 1e-71 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023351 [exp] 329 / 5e-116 AT3G05950 236 / 5e-79 RmlC-like cupins superfamily protein (.1) Lus10038456 [exp] 275 / 4e-95 AT3G05950 204 / 9e-67 RmlC-like cupins superfamily protein (.1) Lus10032016 [exp] 245 / 5e-83 AT5G39160 264 / 3e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10035185 [exp] 244 / 2e-82 AT5G39160 265 / 2e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10035186 [exp] 243 / 7e-82 AT5G39190 265 / 2e-90 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Lus10032015 [exp] 242 / 7e-82 AT5G39160 262 / 3e-89 RmlC-like cupins superfamily protein (.1.2.3) Lus10035279 [exp] 241 / 4e-81 AT5G39160 244 / 2e-82 RmlC-like cupins superfamily protein (.1.2.3) Lus10034254 [exp] 238 / 2e-80 AT5G39160 251 / 6e-85 RmlC-like cupins superfamily protein (.1.2.3) Lus10015129 [exp] 238 / 3e-80 AT5G39130 242 / 2e-81 RmlC-like cupins superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G163200 [exp] 256 / 2e-87 AT3G05950 266 / 5e-91 RmlC-like cupins superfamily protein (.1) Potri.011G162932 [exp] 256 / 2e-87 AT3G05950 268 / 1e-91 RmlC-like cupins superfamily protein (.1) Potri.001G465100 [exp] 256 / 3e-87 AT5G39160 253 / 8e-86 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163300 [exp] 254 / 1e-86 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163216 [exp] 254 / 1e-86 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163800 [exp] 254 / 1e-86 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.019G026400 [exp] 229 / 2e-76 AT3G05950 288 / 2e-99 RmlC-like cupins superfamily protein (.1) Potri.019G026500 [exp] 229 / 2e-76 AT3G05950 288 / 2e-99 RmlC-like cupins superfamily protein (.1) Potri.019G026000 [exp] 227 / 9e-76 AT3G05950 288 / 3e-99 RmlC-like cupins superfamily protein (.1) Potri.019G025900 [exp] 227 / 9e-76 AT3G05950 288 / 3e-99 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10038441 pacid=23158375 polypeptide=Lus10038441 locus=Lus10038441.g ID=Lus10038441.BGIv1.0 annot-version=v1.0 ATGGCCGACCAGAGCAACCTCCAAGATTTCTGCGTTGCGGATCCCGATGCTTCAGTCCTGGTCAACGGCATGACATGCAAAGACCCCCAAACGGTCACAT CCCAAGATTTCTACTTCTCCGGACTTAACACGGCTGGAAACACAACAACCAACCCACAGGGCTCTAGAGTCACGGCCGTAACCGTCAACCAACTCCCCGG CCTCAACACGTTGGGCGTCTCCATGGCCCGAATCGACTACGCCCCCTCCGGTCAGAACGCCCCCCACATGCACCCACGCGCCACCGAGATGGTGATCGTC ATCAAAGGAAGCCTCGAGGTCGGATTCGTCACGTCCAACCCGGGCAATGCTCACTACAGGAAGACGTTGGTCCAAGGTGACGTGTTCGTGTTCCCTGCGA ATTTGGTGCACTACCAACGCAACGTGTTGAACGTGCCGGCTGTTGCTATTGCGGCGTTCTCTAGCCAGAATCCGGGGGTTGTGTCGGTTGCGAATTCGGT GTTTGGTTCGACTCCGGCGATCCCGGCTGATATTCTTGCTAAGTCTTTCTCCATGGATGTTGACTTTGTCAACTTGTTGCAGTCCAACTTTTGA
AA sequence Show only first row Show all	>Lus10038441 pacid=23158375 polypeptide=Lus10038441 locus=Lus10038441.g ID=Lus10038441.BGIv1.0 annot-version=v1.0 MADQSNLQDFCVADPDASVLVNGMTCKDPQTVTSQDFYFSGLNTAGNTTTNPQGSRVTAVTVNQLPGLNTLGVSMARIDYAPSGQNAPHMHPRATEMVIV IKGSLEVGFVTSNPGNAHYRKTLVQGDVFVFPANLVHYQRNVLNVPAVAIAAFSSQNPGVVSVANSVFGSTPAIPADILAKSFSMDVDFVNLLQSNF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38940			RmlC-like cupins superfamily p...		Lus10038441 [exp]	0	1
AT4G12490			Bifunctional inhibitor/lipid-t...		Lus10012763 [exp]	6.3	0.6309
AT3G47570			Leucine-rich repeat protein ki...		Lus10030846 [exp]	10.7	0.6668
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029186 [exp]	11.0	0.6816
AT2G44810		DAD1	DEFECTIVE ANTHER DEHISCENCE 1,...		Lus10028210 [exp]	12.8	0.6388
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10000071 [exp]	16.5	0.6320
					Lus10006913 [exp]	22.4	0.5024
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10000072 [exp]	22.8	0.6186
AT4G21300			Tetratricopeptide repeat (TPR)...		Lus10013405 [exp]	24.0	0.5424
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Lus10029839 [exp]	24.5	0.6109
					Lus10021760 [exp]	28.3	0.5529

Compare expression of checked genes

Lus10038441 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.