Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30760 364 / 8e-122 FAD-binding Berberine family protein (.1) AT5G44400 349 / 4e-116 FAD-binding Berberine family protein (.1) AT5G44390 342 / 3e-113 FAD-binding Berberine family protein (.1) AT4G20860 339 / 4e-112 FAD-binding Berberine family protein (.1) AT2G34790 338 / 6e-112 MEE23, EDA28 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) AT5G44380 336 / 9e-111 FAD-binding Berberine family protein (.1) AT4G20820 329 / 3e-108 FAD-binding Berberine family protein (.1) AT5G44440 327 / 2e-107 FAD-binding Berberine family protein (.1) AT5G44360 325 / 1e-106 FAD-binding Berberine family protein (.1) AT1G30700 324 / 2e-106 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023363 [exp] 600 / 0 AT2G34790 504 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10038439 [exp] 352 / 2e-117 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10032943 [exp] 337 / 4e-111 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10018119 [exp] 336 / 1e-110 AT2G34790 641 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10038446 [exp] 335 / 2e-110 AT4G20860 520 / 0.0 FAD-binding Berberine family protein (.1) Lus10036147 [exp] 329 / 3e-108 AT2G34790 626 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10012641 [exp] 321 / 5e-105 AT5G44440 518 / 2e-180 FAD-binding Berberine family protein (.1) Lus10038436 [exp] 319 / 2e-104 AT4G20820 508 / 1e-176 FAD-binding Berberine family protein (.1) Lus10023361 [exp] 320 / 4e-104 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G158600 [exp] 433 / 9e-149 AT1G30760 499 / 5e-173 FAD-binding Berberine family protein (.1) Potri.001G462700 [exp] 427 / 1e-146 AT1G30760 525 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G161800 [exp] 397 / 6e-135 AT5G44360 550 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G440700 [exp] 387 / 9e-131 AT4G20820 552 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G470100 [exp] 369 / 1e-123 AT1G30700 543 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461900 [exp] 368 / 2e-123 AT4G20820 545 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G464800 [exp] 367 / 5e-123 AT4G20820 526 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G159400 [exp] 365 / 2e-122 AT1G30760 607 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462100 [exp] 365 / 3e-122 AT4G20820 521 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461500 [exp] 363 / 1e-121 AT4G20820 519 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10038442 pacid=23158257 polypeptide=Lus10038442 locus=Lus10038442.g ID=Lus10038442.BGIv1.0 annot-version=v1.0 ATGCTTCAATCCTCCTCTCTGCAACTTCATCAACTCCATCTCAACCAATCCCAAGTAGTCCTCATTCCGACAAGCTCCCCGCTTTACTCCTCCGTCCTGA ACTCTTCGATTCGAAACCTTAGGTTCGCCAACGCCTCTGAATTCTCGAAACCGACATTCATAGTCGTTCCGTACGAGGAATCCCACGTCCAGGCGGCGGT GATTTGCACCAAGAATTCCGGTTTGCAAGTCCGGACGAGGAGCGGAGGCCATGACCATGAGGGCTTATCTTACACCTCCCGTGCGGAGTTTGTGCTTATT GATCTTTCTCACTTCAGGGCCATCGAAATCGACATGAATAACAAGACTGCTTGGATGGAGACAGGCGCCCTGCTAGGCGAATTATACTACGAAAAAGCCA AGAAGAGCGATGTTCATGGCTTCCCAGGTGGAAGCTGTCCGACCGTTGGAGTAGGAGGGCACATCAGCGGAGGCGGATTCGGTTTAATTATGAGGAAATA CGGTCTAGCAGCGGATACAGTCGTGGATGCCAAGATAGTCGATGTAAATGAAAAAATTCTGGACCGGAATTCGATGGGAGAAGATTTGTTCTGGGCGATC AGAAGCAGCCGCGGAGCTAGCTTCGGAGTCATCCCGTCCTGGAAAGTTCGGTTAGTTTCGGTTCCAGAAACCGTAACCATTTTCACCCTGACCAGGACCC TGGAGCAAAACTGGCTTTATTTCGGAAGAATGAATCAATTCCTCACTCTGATGGACAAAAGCTTCCCGGAGTTAGGGCTAGTGGCCGAGACCTGTCAGGA AGTCACCTGGATTCAATCCGTAATGTACTTCGCCAATTTCGGAGTAAACGAATCAACGAACCGACTGATTAACCGAACTTCCAGATCGAAAGATTTCTTC AAGGCGAAATCCGATTACGTGAAGGAACCGATTTCAGATTCTGGGCTCAAGGGGCTTTACGAACGGGTCCTGAAACAGGACGTGTCGTTTCTGATCCTGA CACCTTATGGCGGCAGGATGAGCGGGATACCCGAGTCGGAAACTCCGTTCCCTCACAGGAAAGGTTCCTTGTATAAGATTCAGTATGTGGCGTCGTGGGA CGAGGAGGAAGAAACAGAGGAGAAGATTGGATGGATCAGAGAGCTGTACGGATATATGACCCCGTTTGTTTCGAAAAGTCCTCGAGCTGCTTACGATGAA TTACCGAGATCTCGATTTGGGCCGGGACTGGGGGGTGAAATACTTCGAGGGTAA
AA sequence Show only first row Show all	>Lus10038442 pacid=23158257 polypeptide=Lus10038442 locus=Lus10038442.g ID=Lus10038442.BGIv1.0 annot-version=v1.0 MLQSSSLQLHQLHLNQSQVVLIPTSSPLYSSVLNSSIRNLRFANASEFSKPTFIVVPYEESHVQAAVICTKNSGLQVRTRSGGHDHEGLSYTSRAEFVLI DLSHFRAIEIDMNNKTAWMETGALLGELYYEKAKKSDVHGFPGGSCPTVGVGGHISGGGFGLIMRKYGLAADTVVDAKIVDVNEKILDRNSMGEDLFWAI RSSRGASFGVIPSWKVRLVSVPETVTIFTLTRTLEQNWLYFGRMNQFLTLMDKSFPELGLVAETCQEVTWIQSVMYFANFGVNESTNRLINRTSRSKDFF KAKSDYVKEPISDSGLKGLYERVLKQDVSFLILTPYGGRMSGIPESETPFPHRKGSLYKIQYVASWDEEEETEEKIGWIRELYGYMTPFVSKSPRAAYDE LPRSRFGPGLGGEILRG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44390			FAD-binding Berberine family p...		Lus10038442 [exp]	0	1
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10038526 [exp]	2.0	0.9803
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10005262 [exp]	2.0	0.9841
AT3G61510		AT-ACS1, ACS1	ARABIDOPSIS THALIANA 1-AMINOCY...		Lus10007910 [exp]	4.0	0.9696
AT5G45020			Glutathione S-transferase fami...		Lus10026012 [exp]	4.0	0.9668
AT3G44190			FAD/NAD(P)-binding oxidoreduct...		Lus10013339 [exp]	4.9	0.9643
					Lus10020455 [exp]	4.9	0.9734
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10032950 [exp]	6.5	0.9670
					Lus10041686 [exp]	7.2	0.9547
AT5G53450		ORG1	OBP3-responsive gene 1 (.1.2)		Lus10014920 [exp]	9.6	0.9562
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10036310 [exp]	10.2	0.9600

Compare expression of checked genes

Lus10038442 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.