Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11915 330 / 9e-113 unknown protein AT3G17350 98 / 4e-23 unknown protein AT5G50290 68 / 1e-12 unknown protein AT1G10380 67 / 3e-12 Putative membrane lipoprotein (.1) AT1G21240 47 / 2e-05 WAK3 wall associated kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023362 [exp] 535 / 0 AT1G11915 360 / 2e-124 unknown protein Lus10043098 [exp] 99 / 2e-23 AT3G17350 334 / 7e-115 unknown protein Lus10037078 [exp] 86 / 1e-18 AT1G10380 170 / 6e-50 Putative membrane lipoprotein (.1) Lus10001236 [exp] 84 / 3e-18 AT5G50290 368 / 2e-128 unknown protein Lus10042105 [exp] 83 / 1e-17 AT5G50290 366 / 9e-128 unknown protein Lus10036906 [exp] 74 / 6e-15 AT1G10380 129 / 4e-36 Putative membrane lipoprotein (.1) Lus10036687 [exp] 65 / 9e-12 AT1G10380 316 / 2e-108 Putative membrane lipoprotein (.1) Lus10037235 [exp] 65 / 2e-11 AT1G10380 318 / 5e-109 Putative membrane lipoprotein (.1) Lus10037236 [exp] 57 / 9e-10 AT1G10380 109 / 6e-36 Putative membrane lipoprotein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G007900 [exp] 387 / 6e-135 AT1G11915 379 / 6e-132 unknown protein Potri.004G007400 [exp] 380 / 3e-132 AT1G11915 360 / 1e-124 unknown protein Potri.010G152900 [exp] 109 / 2e-27 AT3G17350 339 / 4e-117 unknown protein Potri.008G099800 [exp] 106 / 2e-26 AT3G17350 332 / 2e-114 unknown protein Potri.008G095900 [exp] 96 / 2e-22 AT1G10380 158 / 2e-46 Putative membrane lipoprotein (.1) Potri.010G158500 [exp] 91 / 2e-20 AT1G10380 164 / 1e-48 Putative membrane lipoprotein (.1) Potri.007G094800 [exp] 72 / 5e-14 AT1G10380 125 / 1e-33 Putative membrane lipoprotein (.1) Potri.015G078700 [exp] 66 / 5e-12 AT5G50290 387 / 4e-136 unknown protein Potri.010G040500 [exp] 64 / 2e-11 AT1G10380 337 / 2e-116 Putative membrane lipoprotein (.1) Potri.005G021300 [exp] 46 / 1e-05 AT5G02070 130 / 5e-35 Protein kinase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038443 pacid=23158188 polypeptide=Lus10038443 locus=Lus10038443.g ID=Lus10038443.BGIv1.0 annot-version=v1.0 ATGGAAACTAGCAGTTCATCGGCCACCATTCTCCTCATCTTCTTCTTACTCACAGCATCATCACCCCTCTGTATAAATTCAGCCAACACCCGGCATAGTT GCAGATCATCCTGCGGCCAAATCCAGATAAACTACCCATTCGGGATCGACGACGGCTGCGGCAGCCCATATTACAAACGCCTCCTCGTCTGCTCGTCCTC CGGCACCCTCCTCCTCCGAACACCGTCAGGAACATACCAAATCCGCTCCATCACTTACTCCGACGACCCCCATCTGATCCTCATCGATCCCTTCATGTGG GCCTGTCAGGACGGCTCAAACTTCCGTCCCACCAGGCCCTTCAGCCTCGACGCCAGCACCCACCTCACTCTCTCCCCTCACAACGACTACCTCTTCTTCA ATTGCAGCAAGGAGATGGTGATCATGGAGCCCAAACCGGTTTTCTGTGACCGGTTCCCGGATCGCTGCGACTCCACTTGCGACACCGCTAGCTACCTCTG CCGGCACTTGCCCCAATGCCCTTCTTCTGCTACTTCTGCTTCGTGCTGTTCATATTTTCCCAAAGCGACCGAATCGCTTAGATTGATGTTGAAGTATTGT GCTACTTACACCAGCGTTTACTGGAGGAACAACAATGCTGGTGCTGGTTCTGGTTCGGTTTCGACTTATTACGGGGAGATTCCCGAGTATGGGATACGAG TAGATTTCGATACGCCGGTTACCTCGCCTTGTCTAAGGTGTCAGGATATGAGTAACGGTGGAGGTGGGACTTGTGGGTTTGATACAGAGTCACAGGAATT CCTCTGCCTTTGTCCTCAGGGGAATTTCACTGCATCTTGTGACCAAGGTCATGGCGATGGAGGTCATAGACATAGCAGGGCAGGAGTAATTGCAGGGAGC GTAGGGGCAGTATCGGCAGCAGGGGCGATCGGAGTTGGTGCCGGAATTTGGTATTTCAACAAGATCAGAGCAAAAGCACCAGTCACTTGTGGTGTTCAAA CCAACGAGAACAGACTTTTCTGA
AA sequence Show only first row Show all	>Lus10038443 pacid=23158188 polypeptide=Lus10038443 locus=Lus10038443.g ID=Lus10038443.BGIv1.0 annot-version=v1.0 METSSSSATILLIFFLLTASSPLCINSANTRHSCRSSCGQIQINYPFGIDDGCGSPYYKRLLVCSSSGTLLLRTPSGTYQIRSITYSDDPHLILIDPFMW ACQDGSNFRPTRPFSLDASTHLTLSPHNDYLFFNCSKEMVIMEPKPVFCDRFPDRCDSTCDTASYLCRHLPQCPSSATSASCCSYFPKATESLRLMLKYC ATYTSVYWRNNNAGAGSGSVSTYYGEIPEYGIRVDFDTPVTSPCLRCQDMSNGGGGTCGFDTESQEFLCLCPQGNFTASCDQGHGDGGHRHSRAGVIAGS VGAVSAAGAIGVGAGIWYFNKIRAKAPVTCGVQTNENRLF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11915			unknown protein		Lus10038443 [exp]	0	1
AT1G80870			Protein kinase superfamily pro...		Lus10014361 [exp]	1.4	0.8918
AT5G58300			Leucine-rich repeat protein ki...		Lus10029005 [exp]	2.4	0.8873
AT1G68430			unknown protein		Lus10003042 [exp]	3.0	0.8976
AT5G58300			Leucine-rich repeat protein ki...		Lus10034257 [exp]	6.9	0.8872
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10035783 [exp]	8.1	0.8826
AT1G11915			unknown protein		Lus10023362 [exp]	9.2	0.8694
AT1G80870			Protein kinase superfamily pro...		Lus10026069 [exp]	9.5	0.8234
AT2G44830			Protein kinase superfamily pro...		Lus10028208 [exp]	9.5	0.8555
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10004962 [exp]	10.2	0.8595
AT5G23100			Protein of unknown function, D...		Lus10000863 [exp]	12.0	0.8449

Compare expression of checked genes

Lus10038443 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.