Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30760 388 / 3e-130 FAD-binding Berberine family protein (.1) AT2G34790 381 / 1e-127 MEE23, EDA28 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) AT5G44400 346 / 7e-114 FAD-binding Berberine family protein (.1) AT5G44390 319 / 2e-103 FAD-binding Berberine family protein (.1) AT5G44380 303 / 3e-97 FAD-binding Berberine family protein (.1) AT5G44360 293 / 2e-93 FAD-binding Berberine family protein (.1) AT4G20860 285 / 3e-90 FAD-binding Berberine family protein (.1) AT1G30700 263 / 5e-82 FAD-binding Berberine family protein (.1) AT1G26410 257 / 2e-79 FAD-binding Berberine family protein (.1) AT1G26380 254 / 2e-78 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023361 [exp] 612 / 0 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10018119 [exp] 386 / 2e-129 AT2G34790 641 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10036147 [exp] 374 / 7e-125 AT2G34790 626 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10038446 [exp] 286 / 7e-91 AT4G20860 520 / 0.0 FAD-binding Berberine family protein (.1) Lus10038439 [exp] 276 / 5e-87 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10008410 [exp] 273 / 3e-86 AT5G44390 436 / 8e-149 FAD-binding Berberine family protein (.1) Lus10026775 [exp] 267 / 2e-83 AT5G44390 448 / 5e-153 FAD-binding Berberine family protein (.1) Lus10026290 [exp] 265 / 2e-82 AT5G44390 473 / 1e-162 FAD-binding Berberine family protein (.1) Lus10012641 [exp] 265 / 2e-82 AT5G44440 518 / 2e-180 FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G462800 [exp] 443 / 8e-152 AT1G30760 659 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158700 [exp] 432 / 1e-147 AT1G30760 664 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G463400 [exp] 405 / 5e-137 AT1G30760 661 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G161500 [exp] 396 / 2e-133 AT1G30760 632 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G159100 [exp] 393 / 2e-132 AT5G44400 614 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G159200 [exp] 393 / 3e-132 AT5G44400 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G160400 [exp] 393 / 3e-132 AT5G44400 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G161300 [exp] 379 / 7e-127 AT1G30760 624 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158901 [exp] 377 / 5e-126 AT1G30760 595 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G160700 [exp] 377 / 6e-126 AT1G30760 627 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF08031 [flax] [poplar] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Lus10038445 pacid=23158116 polypeptide=Lus10038445 locus=Lus10038445.g ID=Lus10038445.BGIv1.0 annot-version=v1.0 ATGGCTTCTCCTTCGTCTTCTTCATCTTCATTCCTTCCCCTGTTTCTCCTCTGCCTCTTCTGCCTCTCCCCCGCCGTAACATTCTCCCGCAAAGTATCAT TCCGATCAGCCGCCCAACAACACAGCTTCCTCCAATGCCTCTCCGACCACGCCGACATCTCAATCCCATTCTCCTCTTCCTTCTTCACCCCTGAGAACTC CAACTTCTCCACCGTCCTCTCCTCCTCCGCCCAAAACCTCCGATACTTACTCCCCTCCGTCCAAAAACCAGTCTTCATCTTCACCCCTCTCCAAGTCTCC CACATCCAGTCCGCCGTCCTCTGCTCCAAGCAGCTGGGCATCCACCTCCGCCTCCGCAGCGGCGGCCATGACTACGAAGGCGTCTCCTACGCTTCCTCCT CTGCTGCCTCCTCCAGCTCCACCTCTTTCCTAATCCTCGACCTCTCCAAGCTCCGCGCCGTGGATGTCGACGTAGCAACTGAAACCGCCTGGGTCCAGGC CGGAGCCACCGTCGGTGGAGTGATCGTCGCCTGGAAATTAAAACTCGTCCCTGTTCCGGCCACCGTAACTGTTTTCACCGTTCCCAAGACGCTTCAACAA GGAGCAACAAAAATACTCTACAAATGGCAGCAAGTCGCCGACAAGCTCGACGACGATCTTTTCATCAGAGTCATTATCAACACCGCCCGAATCGGAAACA CGACGGAGAGAACCGTCGGGACGGCGTACCAAGCTCTGTTCCTCGGCGACTCCAAAAGACTGCTCAGAATCATGGCTACCAGCTTCCCCGAACTGGGTCT CACTAAAAAAGACTGCTTGGAAACCACATGGATCAAATCGGTCCTCTACATCGCCGGATACCCAGCCAACACCCCGCCGGAAGCCCTCCTCGAAGGGAAA TCTCTGTTCAAAAATTACTTCAAAGCCAAATCAGATTTCGTGAAAGACCCTATTCCGGAATCGGGTCTTGAAGGGATATGGACGAGATTCCTCCAAGAAG ACAGCCCATTGACGATCTGGAACCCGTTGGGCGGCGAAATGGCGAGAATCTCCGAATCGGCGATTCCGTTCCCTCACCGGAAGGCGGCGTTCATGATCCA GTATTTGACCAACTGGCAAGACAGCGATAAGAAGAGCGAGGAAAAGCATATGGATTGGATGAGGAAGCTTTACAACTACATGACGCCGTACGTGACGATG ATGCCGAGAGCGGCGTACGTGAATTACAGGGATTTGGATTTAGGGACGAACAAGGATTGCAATTCGAGCTTCATTGAAGCCAGCAGCTGGGGGCACAAGT ATTTCAAGGACAATTTCAACAAGCTTGTGCAGGTGAAGACCAAGTTTGACCCTGAGAATTTCTTCCACCATGAACAGAGTATTCCACCGCTGCCGGTGTC GATGAGGAAGAGGAACCGGAGAGGTGGGATCAGATTTAATTAA
AA sequence Show only first row Show all	>Lus10038445 pacid=23158116 polypeptide=Lus10038445 locus=Lus10038445.g ID=Lus10038445.BGIv1.0 annot-version=v1.0 MASPSSSSSSFLPLFLLCLFCLSPAVTFSRKVSFRSAAQQHSFLQCLSDHADISIPFSSSFFTPENSNFSTVLSSSAQNLRYLLPSVQKPVFIFTPLQVS HIQSAVLCSKQLGIHLRLRSGGHDYEGVSYASSSAASSSSTSFLILDLSKLRAVDVDVATETAWVQAGATVGGVIVAWKLKLVPVPATVTVFTVPKTLQQ GATKILYKWQQVADKLDDDLFIRVIINTARIGNTTERTVGTAYQALFLGDSKRLLRIMATSFPELGLTKKDCLETTWIKSVLYIAGYPANTPPEALLEGK SLFKNYFKAKSDFVKDPIPESGLEGIWTRFLQEDSPLTIWNPLGGEMARISESAIPFPHRKAAFMIQYLTNWQDSDKKSEEKHMDWMRKLYNYMTPYVTM MPRAAYVNYRDLDLGTNKDCNSSFIEASSWGHKYFKDNFNKLVQVKTKFDPENFFHHEQSIPPLPVSMRKRNRRGGIRFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30760			FAD-binding Berberine family p...		Lus10038445 [exp]	0	1
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10028039 [exp]	1.4	0.7977
AT1G24040			Acyl-CoA N-acyltransferases (N...		Lus10030837 [exp]	5.0	0.7884
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10035105 [exp]	6.2	0.7947
AT1G79550		PGK	phosphoglycerate kinase (.1.2)		Lus10031167 [exp]	9.5	0.8207
AT2G30920		ATCOQ3, EMB3002	embryo defective 3002, coenzym...		Lus10033512 [exp]	12.0	0.7658
AT2G28100		ATFUC1	alpha-L-fucosidase 1 (.1)		Lus10016140 [exp]	14.2	0.7871
AT2G32440		ATKAO2, CYP88A4...	ARABIDOPSIS ENT-KAURENOIC ACID...		Lus10000026 [exp]	14.8	0.7624
AT2G34180		ATWL2, CIPK13, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10025396 [exp]	15.0	0.7870
AT5G03510	C2H2ZnF		C2H2-type zinc finger family p...		Lus10023912 [exp]	15.5	0.7588
AT1G44750		ATPUP11	purine permease 11 (.1.2.3)		Lus10043350 [exp]	17.9	0.7279

Compare expression of checked genes

Lus10038445 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.