Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20860 493 / 1e-170 FAD-binding Berberine family protein (.1) AT5G44360 469 / 2e-161 FAD-binding Berberine family protein (.1) AT4G20820 451 / 3e-154 FAD-binding Berberine family protein (.1) AT5G44440 447 / 1e-152 FAD-binding Berberine family protein (.1) AT1G30760 439 / 1e-149 FAD-binding Berberine family protein (.1) AT2G34790 429 / 1e-145 MEE23, EDA28 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) AT1G30700 428 / 3e-145 FAD-binding Berberine family protein (.1) AT5G44410 419 / 1e-141 FAD-binding Berberine family protein (.1) AT1G30730 414 / 1e-139 FAD-binding Berberine family protein (.1) AT5G44400 412 / 8e-139 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026290 [exp] 546 / 0 AT5G44390 473 / 1e-162 FAD-binding Berberine family protein (.1) Lus10032943 [exp] 471 / 7e-162 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10041290 [exp] 468 / 9e-162 AT2G34790 375 / 8e-126 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10023363 [exp] 452 / 7e-155 AT2G34790 504 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10012641 [exp] 445 / 1e-151 AT5G44440 518 / 2e-180 FAD-binding Berberine family protein (.1) Lus10038436 [exp] 442 / 7e-151 AT4G20820 508 / 1e-176 FAD-binding Berberine family protein (.1) Lus10023361 [exp] 440 / 3e-149 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10038439 [exp] 434 / 1e-147 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10039682 [exp] 429 / 1e-145 AT5G44440 481 / 9e-166 FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G161800 [exp] 588 / 0 AT5G44360 550 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462700 [exp] 511 / 9e-178 AT1G30760 525 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G440700 [exp] 511 / 1e-177 AT4G20820 552 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162800 [exp] 498 / 1e-172 AT5G44440 540 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162856 [exp] 496 / 4e-172 AT5G44440 545 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158600 [exp] 496 / 5e-172 AT1G30760 499 / 5e-173 FAD-binding Berberine family protein (.1) Potri.011G162940 [exp] 494 / 3e-171 AT5G44440 543 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162884 [exp] 493 / 9e-171 AT4G20820 527 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162916 [exp] 493 / 2e-170 AT4G20820 532 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G163000 [exp] 493 / 2e-170 AT4G20820 532 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF08031 [flax] [poplar] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Lus10038446 pacid=23158378 polypeptide=Lus10038446 locus=Lus10038446.g ID=Lus10038446.BGIv1.0 annot-version=v1.0 ATGAAGAACCACCTTATTGCTGTTTTCCTCTCCTCTGTAGCACTCATCGTTACCGCCGTCACTTCACATTCCCACTCCTCCGTTTCCGAAAACTTCGTCA AATGCATCTCCACCCAAATCAACGGCTACCCGAGATCATTCCCGACCATTTTTGGTCGGGAATCGTCTCTCTACTCTCATGTTCTGGACTCGAGAGTGCA GAACATGAGGTTCCAGAACTCCACTTCCAAGCCTCTCCTAATTATGACTCCTTCTGAAGTCGGGGAAATCCAGGCTGCCCTACATTGCAGCAGGGCGAAC GGCCTGGACCTCAGACAGCGTAGCGGAGGCCACGACTACGAAGCCATTTCCTACGTCAGCACCGGGAAAAAGCCGTACATCGTCGTTGACCTCTTCAACC TGAACTCCGTTCAGATCGATGTAAAGTCAGAGACGGCTTGGGTCGAAAGCGGAGCACAACTCGGAGAGCTCTACTACGCAATTGCTAAGCAGACGTCAAA TTTAGCTTTTCCGGCGGGAATCTGCCCCACCGTTGGAGTCGGCGGCCACTTCGGGGGTGGCGGATTCGGGACTCTGGTGAGGAAATACGGTTTGGCGGCG GATAACGTTATTGACGCTAACTTGATCGACGCTCGCGGGAGGGTTATGAATAGGAAGGAGATGGGGGAAGAGGTTTTCTGGGCGATCAGAGGCGGCAGCG CTGGCAGTTTCGGGATTGTTGTTTCGTGGAAGGTTAAGTTGGTCAGAGTTCCTGAGAAGCTGACGTTCTTCTCTGTTTCCAAGACTCTGGAGCAAGGAGC GAATGGATTGATACACAAATGGCAAAAATTCGGACACGATGCTCCCGAGGATTTGTTCGTCAGGATTCTGATTCTGAACTCGGTGAACGGAAATGGCAAC AAGACGGTGGAAGCAAGGTTTCAGTCGCTGTTTCTCGGAACGATCGATAAACTGATCCCTCTCGTCAACCAGACATTCCCTGAGCTCGGCCTGCGAGCCG AGAACTGTACCGAGATGACATGGGGCGAATCGACGCTGGAATTTGCAGGATTCAAATCGGGGAGCGTAATCGAAGCTCTGCTAGACAAGACCCAGATGTT CAAAGCCAAATTCAAAGCAAAGACAGACTTCGTCACCATGGACCCGATTTCCGAAACCGGGTTAGAAAAGATATGGGAGATGATGCTGGAGGAAGACGTC CCAGTCGTCGTGCTCGAGCCTCTGGGCGGGAAGATGAACGAGATATCGGAATCCGACACGCCGTTCCCGCACAGGAAAGGGCATCTCTATAACATCCAGT ACTTGGTGAAGTGGGAAGGCGGCGGAGTGGAGGATGAGACGAAGCACTTGGGATGGATGAACAAGGTTTACGATTACATGGAGCCGCACGTTTCGAAATC GCCGAGGGCGGCGTATGTGAACTACAGGGATCTGGATTTGGGGGAGAAGGCGGCGACGGGGTTCTCGGCGGCGAAAGGGTGGGGGGAGAAATACTTCAAG GGGAATTTCGAGAGGTTGAGTAAGGTGAAGAGTGCGGTTGATCCTGACGATTTCTTCAGGAATGAACAGAGTATTCCTCTGTTCAAGTAA
AA sequence Show only first row Show all	>Lus10038446 pacid=23158378 polypeptide=Lus10038446 locus=Lus10038446.g ID=Lus10038446.BGIv1.0 annot-version=v1.0 MKNHLIAVFLSSVALIVTAVTSHSHSSVSENFVKCISTQINGYPRSFPTIFGRESSLYSHVLDSRVQNMRFQNSTSKPLLIMTPSEVGEIQAALHCSRAN GLDLRQRSGGHDYEAISYVSTGKKPYIVVDLFNLNSVQIDVKSETAWVESGAQLGELYYAIAKQTSNLAFPAGICPTVGVGGHFGGGGFGTLVRKYGLAA DNVIDANLIDARGRVMNRKEMGEEVFWAIRGGSAGSFGIVVSWKVKLVRVPEKLTFFSVSKTLEQGANGLIHKWQKFGHDAPEDLFVRILILNSVNGNGN KTVEARFQSLFLGTIDKLIPLVNQTFPELGLRAENCTEMTWGESTLEFAGFKSGSVIEALLDKTQMFKAKFKAKTDFVTMDPISETGLEKIWEMMLEEDV PVVVLEPLGGKMNEISESDTPFPHRKGHLYNIQYLVKWEGGGVEDETKHLGWMNKVYDYMEPHVSKSPRAAYVNYRDLDLGEKAATGFSAAKGWGEKYFK GNFERLSKVKSAVDPDDFFRNEQSIPLFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20860			FAD-binding Berberine family p...		Lus10038446 [exp]	0	1
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10001009 [exp]	1.0	0.9571
AT5G45340		CYP707A3	"cytochrome P450, family 707, ...		Lus10028594 [exp]	2.8	0.9311
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10013067 [exp]	3.0	0.9190
AT3G25280			Major facilitator superfamily ...		Lus10025881 [exp]	4.7	0.8463
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10012978 [exp]	7.7	0.8663
AT1G61800		ATGPT2, GPT2	ARABIDOPSIS GLUCOSE-6-PHOSPHAT...		Lus10007653 [exp]	8.0	0.8817
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10026347 [exp]	12.0	0.7501
AT5G48540			receptor-like protein kinase-r...		Lus10038227 [exp]	12.4	0.8635
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10000453 [exp]	13.0	0.8453
AT3G46560		TIM9, EMB2474	embryo defective 2474, Tim10/D...		Lus10028819 [exp]	13.6	0.6829

Compare expression of checked genes

Lus10038446 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.