Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34770 339 / 2e-106 ATFAH1, FAH1 ARABIDOPSIS FATTY ACID HYDROXYLASE 1, fatty acid hydroxylase 1 (.1) AT4G20870 327 / 4e-102 FAH2, ATFAH2 ARABIDOPSIS FATTY ACID HYDROXYLASE 2, fatty acid hydroxylase 2 (.1) AT2G34780 202 / 4e-52 EMB1611, MEE22 EMBRYO DEFECTIVE 1611, maternal effect embryo arrest 22 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023360 [exp] 2066 / 0 AT2G34780 312 / 2e-87 EMBRYO DEFECTIVE 1611, maternal effect embryo arrest 22 (.1.2) Lus10023359 [exp] 446 / 3e-144 AT2G34770 366 / 9e-130 ARABIDOPSIS FATTY ACID HYDROXYLASE 1, fatty acid hydroxylase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G161901 [exp] 435 / 5e-125 AT2G34780 252 / 7e-68 EMBRYO DEFECTIVE 1611, maternal effect embryo arrest 22 (.1.2) Potri.001G463800 [exp] 388 / 2e-123 AT2G34770 376 / 9e-134 ARABIDOPSIS FATTY ACID HYDROXYLASE 1, fatty acid hydroxylase 1 (.1) Potri.001G463700 [exp] 429 / 5e-123 AT2G34780 360 / 4e-103 EMBRYO DEFECTIVE 1611, maternal effect embryo arrest 22 (.1.2) Potri.011G162000 [exp] 386 / 1e-122 AT2G34770 374 / 3e-133 ARABIDOPSIS FATTY ACID HYDROXYLASE 1, fatty acid hydroxylase 1 (.1) Potri.007G004001 [exp] 72 / 3e-14 AT2G34780 55 / 2e-09 EMBRYO DEFECTIVE 1611, maternal effect embryo arrest 22 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04116 [flax] [poplar] FA_hydroxylase Fatty acid hydroxylase superfamily
Representative CDS sequence Show only first row Show all	>Lus10038447 pacid=23158460 polypeptide=Lus10038447 locus=Lus10038447.g ID=Lus10038447.BGIv1.0 annot-version=v1.0 ATGGTGGCAAAGGGCTTTGTTGTTGATCTCGATAAACCACTTGTTTTCCAGGTTGGTCATCTAGGAGAGGCATATGATGAATGGGTTCACCAGCCTATAG TTAGCAGAGAGGGTCCAAGGTTCTTCGCAAATGATGTTATGGAGGCCTTGACTCGCACAGTTTGGTGGGCGATTCCAGCCATCTGGCTGCCAGTGGTCTG CTGGTTTGCCTTAATGTCTGCACGGATGGGCCTTGCACTTCCCGAGGTTGCTTCATTGGTGGTTTTTGGCATTTTCGTATGGACATTACTCGAATACACC TTGCATCGCTTCCTGTTCCACATTAAAACAGCCAGTTATTGGGGAAATACGGCTCACTACCTTCTTCATGGCTGCCACCATAAGCATCCAATGGATGGTT TGCGACTGGTGTTTCCCCCAGCTGCAACAGCTATCCTACTCGTACCTTTCTGGAATGTGCTGAAGCTCATGGCCACGCCCTCGACCACTCCTGCTCTTTT CGCCGGTGGACTGCTGGGATACATCATGTACGACTGCACTCATTACTACTTGCACCATGGACAGCCATCGATCGAAGTCCCTAAAAACCTCAAGTGGAGC GAGAAGTGCTCAAAGTTGCTGGAAGGGAGGAAGGCTCTAAGGAAGGCGGTGCAGCTCCTCAAAGAAGAGCTTGACAAGACTCAACAAGACAATGCCAATC TTCAAAAAGAATGTGAGGAGGCACGGAACATTGCTGCCAAAGAGAGTGAAAGGAAAGAGAAGGAGCTGTCAGTAAGAGTGTCTCTTGAGAATGAGGTTTC TGCTTTGAAATCTGAGATCTCCTCACTGCAACAGAGAGGAAGCTTAGATGCGAAAGGAAGGGATAGGGAAATAGGGCTACTGCGAGAACAAGTTTCCGAG ACCAACAAACTTAAAGAGCTTCTTGAGAAAGAGAAGAAAAGGGCAGATACTGAGAAGAAGAATGCCGAGACAGAGAAAAGAAGAGCAGCCGAGGCTCAAA AGCGTGTGAAAGCAGAGAAGGTTAAGGCTGTTGAAGAAAATAAGCATGCTGATGTTGAAAGAAAGAAGGCTGAGGGTTACAGGGAGCAGTTGGAGGTACT GAAGAAAGAAGTTGAAGATATAAATTCATTACTTATTTCCGAGAGGGAGGAGAAAGCAAGATGCTTGGCTATTAAGACCTCATTGGAGAATGAGGTATCT GTTCTTCAAGCTGAGATATCCTGTTTGAAGAAAGAGTGCGCTGCTGGTCAGCAGAAGGAGAAGGAAACTCAGAATGCCTCTGAAATTTTTGAAAATGCTA ATGCAGAGAATGCTGGTGCAGAAAGGAAGCATGGTGGCTATTGTGAAAATAAGGCTGAAACTTGTCTGTTCCAGCTACAGGCATTGATGAAAGAAGTAGA AGAAACCAAATCAGTGTTGGTTTTTGAAAAGGAGGAGCATAGGAAAGAAGTTGCCCGAAGACTCTTGTTGGAAGAAGAGATTGTTGGGTTAAAGTCTCAA ACCTGCTGGTTACAACAAAGAGGAGCTGAAGATATTCATGGGGAAATAGAGCTTCTCAAAGGTTCCCTGGGTGGGAAAGAAGAGGAAATTCGGAAACTTA AGGAACTTTTTGATAAAGTTAAATTGCAGTTGAATTCTGAGAAGAAGAAAGTTGAAGTGCAGAAGAAGATTGCTGATGAAGCATGTGAACGGCTGAAAGC TGAAAAGTCTAAGGTGGCCGCTGAAAGTAAGAATGCTAGTTATGAGGTAAAGAAGGCTGAAAAATTTCGGGTGCAGTTAGATTATCTGAAGAAAGACTTC CTTAAAGTGCAATCAGAATTGGAGTCTGAGAAAGAGAAGTTCTCAAAGATGAAGGAAGAGCGGGAAGTGGAACGACAAAATGTGATAAAGGCAAGACAGT CGGTGGAAGCTGAAATTGCCAAGGTAGACCACCAAAGAAAGCTTGCTCAAGCGAATGGTAAGGTGACTGCGCAAGAAAGAGCTCGTGCTGACGAACTTTC TGGCCAGCTAGAACTATATAAACATAAGAATGAGGAGTTGCAGAAACAGATACAACATTTTGTTCACTGCCAAAATATTACAGAACTACCTGGCACTTTG CCTGTGGGAAAAGATAACACCAAATTCACAAAGATGAAGCTTCTCAAGAAGCAATTGAAGCTTGGAAAGATGCAGTTGAAGCATTCCAAGCAAGTGGCTG AGTTTGAAAAGCACCGCAATGTGATCCTACGGGAAGAGCTAGGCAACCTGAGGCATGATTTTGTTCGGATTTCTGGTCGCTTGGATCTGCTGGCTAAATG TTTCTCTTCAAATGTTGAAGGTATAGCAGACATGAAAAAGGATGGAGCTCTTGGAGAGATGCAGTATCTGATGAAGGGAAGAAAGCTCTATGATATAGAA CCACATCAGATGTATACTAAAAAAGAAAGCGAAGATTTCAACCCTGACTGCGGAGCTAAAGCTACGACTAATCTTCTGAAGCATGCTGATATGCTCTCAC CTGCATGTGACCTCAGTTTATCTACCTCAGGTATTGATTCTCAGTTGGAGTCTTTTCAGGGAGGCTCTAACACAAAGTTGTTACTACATTCTTCAATGCA TGCCAGTTCGGCGTCTTTTTCTGATGGTGAGTTGGTCCACTCACAGGACAGGGGTGAGTTTTTTCCATTATCAGAGAAAATGGTTGAAGATAATTCTGAT TCTCAACCAACTTTTCCCTACGTGTCTGCGGAGGTTAAGAGCTTACGAAAAAGAAGAAATCTTAGTATTGATCATTATGATCACAGAGACCAAGTGGTTT TGGATGCTGTTGAGTCTGTAAAGCATTTGTTCATGGAGGATAAAAAGTTGCATCTACAGATGCAAGAGAAATTTCACGTCTTGCATCAAATTTTGAATGG ACAAAAGGATGTACAGTTGGAAGAACCAACAAATCTAGATCCCGTCATCCAATATGGCTCATGTGATAAACTTGAGAGATTGCACAAGAGGAGAAAGCTA TCCCCTGAAGATGAGTCTGTTTTGAAACCTGTTCATGATACGGTTAAACCTGGCAACAAGAAAATTTTTGAAGGGAAAGTTATCGGTGAGCTAGATGCAA CAAGTCCAAATGATGTTTCTATCAGGGCAGAACAGGCTTTTGAAGAGACTGGTAAGAGTTATGTGAAAGCCGTCCTGGATATTTTGCCCAATTTTGAGGA TATAGCTGATGTGGATTACATGAAATTGCTGGAGTTGGCTAACAGTGTTGAGGAGGAAATATACAAGCAAGCAATGGAAATGCCTCTGTCTCCTACACTC CCTGAAATCAGTTTTCCGGAGGCTTTAGTATTATCTGATGTGACAAGGAATACAGAGCTTGGCAGCATCTTCCATGGGGAGGCTGACACCATTGATATGG AACTGCACTGCAATGAATCAAGAGGTCATGGCTCTAAAATCACTCATGAGGGATCTCGACATGAGAAGGAAGATCTAGCCGGGGATGTCTATTCTCAATC ACTGGAAGCAGATAAAGCTTCCAGTAGATGGTCGGGGAACTGTGGATATGGGCCTAAGACGGCACGTATTCCCACAATTTTTGTAACTACTTATGTTGAA GATTCCAGGTCCATTTACAGGGTCTTCTCTGCCACAAAAGCTTGCATGGATTACTGTGCTGTAAATAGTCATCCTCACTCCATGCTACAGAGAATCCTGC ATGCTGTCAAAATACAGGAAAAAATTTCATCTATGGAGAGAAGCTGTGTACTCTTCACCTTGATGGTTCTTAACTTCTCTGAATGCAAGTTGGTGAAAAC ACGAAGGATTTTGTATAAGGATCTAATTGCTTATGTAGATTCTCTGGCTAGAGACCTCCAACCAGTGTTATCTACTGCAGGAGGGAGAAGCTCATTCGAA GAAGTGTGTTCTTTATATGAACTGCTTGGCATCATTGACGACTTTCTCATCAATGGGACAATTTTTGAATGTACCAACTTTACTTCGGATTTCCGTAGTG AGGAAGAATTGAAGTTCAGCAGAAAATCTGCTACAGTTGAACAGATGGTGGTTGGGAGTACTTTGCTGTCATCTATTTGCACATCAACTGGATATCTAGG ATTCGTTTGTGAGACTTCCTACAATCTTCTACGGAAATCCAGATGTGATACTGCCTTCCTATTGACGATATTTCATGTCTTTGCTCATGTTGTCCGGGAA CAGTATTTCTCCTCTAATGACTTCGGCTTGACCATGATTGTGGTGAGATCAATTGTTGGTTGTCTCGAAAGGAAAATGTCACTGGTTGCTTCAAGTGACA CCATTGATATGGAACTGCACTGCAATGAATCAAGAGGTCATGGCTCTAAAACCATTCGTGAGGGATCTCGACATGAGAAGGAAGATTTAGTCGGGGATGT CTATTCTCAATCACTGGAAGCAGATAAAGCTTCCAGTAGATGGTCGGCGAACTGTGGATATGGGCCTAAGGCAGCCCACATTCCTGCAATTTTTGTAACT TCTTCTGTTGAAGATTCCAGGTCCATTTACAGGGTCTTCTCTGCCACAAAAGCTTGCATGGATTACTGTGCTGTAAATAGTCATCCTCACTCCATGCTAC AGAGAATCCTGCATGCTGTCAAAATACAGGAAAAAATTTCATCTATGGAGAGAAGCTGTGTACTCTTCACCTTGGTGCTGCTTAACTTCTCTGAATGCAA GTTGGTGCAAACACGAAGGATTTTGTATAAGGATCTAATTGCTTACGTAGATTCTCTGGTTAGAAACCTCCAACCAGTTTTATCTACTGCTGGAGGGAGA AGCCCCTTCGAAGAAGTGTGTTCTCTATATGAACTGCTTGGCATCATTGGCGACTTTCTCATCAATGGGACAATTTTTGAATGTACCAACTTTACTTCGG ATGTCCGTAGTGTGGAAGAATTGCAGTTCAGCAGAAAATCTGCTACAGTTGAACAGATGGTGGTTGGGAGTACTTTGCTATCATCTATTTGCACATCAAC TGGATATCTAGGATTCGTTTGTGAGACTTCCTACAATCTTCTACAGAAATCCAGATGTGATACTGCCTTCCTGTTGATCGTACTTCATGTCTTTGCTCAT GTTGTCCGGGAACAGTATTTCTCCTCTAATGAGTTTGGTTTGACAATGAATGTGGTGAAATCAATTGTTGGTTGGCTTGAAAGGAAGAGCTCATTGGTAG CTTCAAGCCCTACTCATCATTCATCTGAAAAAACTATCGAGCTTCAGTTTATGTGTTGCTCAACATGCCCATTTGGTGCAGTTTCTATAGATATAATTAC GTCTGTGCTGTTGGAAAAGCTCTGGGGTTCTGAAGATCCTGAAACTACGCGTAGAATGGAATCGACAAGTTCGACCAACTCCAATCTATTGTTGTTTGAG CATAATGAAGTTACGGAAGGTATTAGTGGATCAAAGTCCATGAATGGAACGATGGGTGATACAAGCAATATTCTGTCGTTATTAGAGCTTGTCTCCTGCA AAATGGGATGGGAATGGACGCATAGCAAAGTAGTACCTGAGTTGCTTCAAATGTTGGAGAGATCTGTGACAAGCACCTTTCAGATTGCTGCTGTTCTTTT CCTCGGTGAAGTTGGAAGGTTTGGAGTCGCTGCTTCAGGTTCTGAAGATAAAGGAGTGGAGAGTCTAACATGCAAATTATCTAGCTTCCTTCGCAAGGTA ATGGCCGAGGAAGCCGTCTTCTCTGTTCAAATCGCCACGGTGGCCTCTCTTCTTAGGCTTCTGCCTCTGGACTTCCCAAGTATCGTGGACGAGTCTTTCA AATGCTCGACCTTTCCGAGTCAGTCTGCCGCGATCAATCTGATGAGGGACTGGTTTTCTCGTTTGAGCAAGGACCGGCAGGCAACGCAGTTAAGCTTCCT GCAATCTCAAATGGACACACGTTGA
AA sequence Show only first row Show all	>Lus10038447 pacid=23158460 polypeptide=Lus10038447 locus=Lus10038447.g ID=Lus10038447.BGIv1.0 annot-version=v1.0 MVAKGFVVDLDKPLVFQVGHLGEAYDEWVHQPIVSREGPRFFANDVMEALTRTVWWAIPAIWLPVVCWFALMSARMGLALPEVASLVVFGIFVWTLLEYT LHRFLFHIKTASYWGNTAHYLLHGCHHKHPMDGLRLVFPPAATAILLVPFWNVLKLMATPSTTPALFAGGLLGYIMYDCTHYYLHHGQPSIEVPKNLKWS EKCSKLLEGRKALRKAVQLLKEELDKTQQDNANLQKECEEARNIAAKESERKEKELSVRVSLENEVSALKSEISSLQQRGSLDAKGRDREIGLLREQVSE TNKLKELLEKEKKRADTEKKNAETEKRRAAEAQKRVKAEKVKAVEENKHADVERKKAEGYREQLEVLKKEVEDINSLLISEREEKARCLAIKTSLENEVS VLQAEISCLKKECAAGQQKEKETQNASEIFENANAENAGAERKHGGYCENKAETCLFQLQALMKEVEETKSVLVFEKEEHRKEVARRLLLEEEIVGLKSQ TCWLQQRGAEDIHGEIELLKGSLGGKEEEIRKLKELFDKVKLQLNSEKKKVEVQKKIADEACERLKAEKSKVAAESKNASYEVKKAEKFRVQLDYLKKDF LKVQSELESEKEKFSKMKEEREVERQNVIKARQSVEAEIAKVDHQRKLAQANGKVTAQERARADELSGQLELYKHKNEELQKQIQHFVHCQNITELPGTL PVGKDNTKFTKMKLLKKQLKLGKMQLKHSKQVAEFEKHRNVILREELGNLRHDFVRISGRLDLLAKCFSSNVEGIADMKKDGALGEMQYLMKGRKLYDIE PHQMYTKKESEDFNPDCGAKATTNLLKHADMLSPACDLSLSTSGIDSQLESFQGGSNTKLLLHSSMHASSASFSDGELVHSQDRGEFFPLSEKMVEDNSD SQPTFPYVSAEVKSLRKRRNLSIDHYDHRDQVVLDAVESVKHLFMEDKKLHLQMQEKFHVLHQILNGQKDVQLEEPTNLDPVIQYGSCDKLERLHKRRKL SPEDESVLKPVHDTVKPGNKKIFEGKVIGELDATSPNDVSIRAEQAFEETGKSYVKAVLDILPNFEDIADVDYMKLLELANSVEEEIYKQAMEMPLSPTL PEISFPEALVLSDVTRNTELGSIFHGEADTIDMELHCNESRGHGSKITHEGSRHEKEDLAGDVYSQSLEADKASSRWSGNCGYGPKTARIPTIFVTTYVE DSRSIYRVFSATKACMDYCAVNSHPHSMLQRILHAVKIQEKISSMERSCVLFTLMVLNFSECKLVKTRRILYKDLIAYVDSLARDLQPVLSTAGGRSSFE EVCSLYELLGIIDDFLINGTIFECTNFTSDFRSEEELKFSRKSATVEQMVVGSTLLSSICTSTGYLGFVCETSYNLLRKSRCDTAFLLTIFHVFAHVVRE QYFSSNDFGLTMIVVRSIVGCLERKMSLVASSDTIDMELHCNESRGHGSKTIREGSRHEKEDLVGDVYSQSLEADKASSRWSANCGYGPKAAHIPAIFVT SSVEDSRSIYRVFSATKACMDYCAVNSHPHSMLQRILHAVKIQEKISSMERSCVLFTLVLLNFSECKLVQTRRILYKDLIAYVDSLVRNLQPVLSTAGGR SPFEEVCSLYELLGIIGDFLINGTIFECTNFTSDVRSVEELQFSRKSATVEQMVVGSTLLSSICTSTGYLGFVCETSYNLLQKSRCDTAFLLIVLHVFAH VVREQYFSSNEFGLTMNVVKSIVGWLERKSSLVASSPTHHSSEKTIELQFMCCSTCPFGAVSIDIITSVLLEKLWGSEDPETTRRMESTSSTNSNLLLFE HNEVTEGISGSKSMNGTMGDTSNILSLLELVSCKMGWEWTHSKVVPELLQMLERSVTSTFQIAAVLFLGEVGRFGVAASGSEDKGVESLTCKLSSFLRKV MAEEAVFSVQIATVASLLRLLPLDFPSIVDESFKCSTFPSQSAAINLMRDWFSRLSKDRQATQLSFLQSQMDTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34780		EMB1611, MEE22	EMBRYO DEFECTIVE 1611, materna...		Lus10038447 [exp]	0	1
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10003343 [exp]	1.0	0.9526
AT4G18820			AAA-type ATPase family protein...		Lus10005422 [exp]	3.5	0.9274
AT1G34110			Leucine-rich receptor-like pro...		Lus10017782 [exp]	4.7	0.8944
AT3G13560			O-Glycosyl hydrolases family 1...		Lus10013758 [exp]	7.7	0.8983
AT5G55230		ATMAP65-1	microtubule-associated protein...		Lus10043178 [exp]	8.5	0.8976
AT5G06770	C3HZnF		KH domain-containing protein /...		Lus10004183 [exp]	9.4	0.8964
AT3G19180		ATCDP1, ARC6H, ...	A. THALIANA CHLOROPLAST DIVISI...		Lus10042298 [exp]	11.2	0.8842
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10019139 [exp]	12.4	0.8967
AT4G00980			zinc knuckle (CCHC-type) famil...		Lus10003998 [exp]	14.3	0.9033
AT3G19180		ATCDP1, ARC6H, ...	A. THALIANA CHLOROPLAST DIVISI...		Lus10026359 [exp]	16.9	0.8834

Compare expression of checked genes

Lus10038447 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.