Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30500 175 / 5e-55 CCAAT NF-YA7 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) AT2G34720 157 / 1e-47 CCAAT NF-YA4 "nuclear factor Y, subunit A4", nuclear factor Y, subunit A4 (.1) AT1G17590 117 / 4e-31 CCAAT NF-YA8 "nuclear factor Y, subunit A8", nuclear factor Y, subunit A8 (.1.2.3.4) AT1G72830 114 / 1e-29 CCAAT NF-YA3, ATHAP2C, HAP2C "nuclear factor Y, subunit A3", nuclear factor Y, subunit A3 (.1.2.3) AT1G54160 113 / 1e-29 CCAAT NFYA5, NF-YA5 NUCLEAR FACTOR Y A5, "nuclear factor Y, subunit A5", nuclear factor Y, subunit A5 (.1) AT3G20910 111 / 5e-29 CCAAT NF-YA9 "nuclear factor Y, subunit A9", nuclear factor Y, subunit A9 (.1) AT3G14020 109 / 3e-28 CCAAT NF-YA6 "nuclear factor Y, subunit A6", nuclear factor Y, subunit A6 (.1) AT5G12840 105 / 7e-27 CCAAT NF-YA1, ATHAP2A, HAP2A, EMB2220 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4) AT3G05690 93 / 3e-22 CCAAT NF-YA2, ATHAP2B, HAP2B, UNE8 UNFERTILIZED EMBRYO SAC 8, "nuclear factor Y, subunit A2", HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 2B, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 2B, nuclear factor Y, subunit A2 (.1) AT5G06510 92 / 3e-22 CCAAT NF-YA10 "nuclear factor Y, subunit A10", nuclear factor Y, subunit A10 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023358 [exp] 298 / 2e-103 AT1G30500 192 / 5e-63 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Lus10016411 [exp] 120 / 5e-32 AT5G12840 140 / 1e-39 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4) Lus10011326 [exp] 115 / 9e-31 AT1G30500 118 / 2e-32 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Lus10012202 [exp] 115 / 1e-30 AT1G30500 121 / 7e-34 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Lus10019708 [exp] 114 / 2e-28 AT5G17680 495 / 1e-150 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10013592 [exp] 96 / 8e-23 AT5G06510 175 / 1e-52 "nuclear factor Y, subunit A10", nuclear factor Y, subunit A10 (.1.2.3) Lus10021259 [exp] 96 / 8e-23 AT5G06510 178 / 5e-54 "nuclear factor Y, subunit A10", nuclear factor Y, subunit A10 (.1.2.3) Lus10009944 [exp] 88 / 5e-20 AT5G12840 229 / 1e-73 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4) Lus10030137 [exp] 86 / 2e-19 AT5G12840 170 / 5e-51 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G098400 [exp] 238 / 3e-79 AT1G30500 171 / 4e-54 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Potri.001G372100 [exp] 238 / 4e-79 AT1G30500 170 / 1e-53 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Potri.009G060600 [exp] 133 / 2e-37 AT5G12840 114 / 9e-30 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4) Potri.001G266000 [exp] 129 / 7e-36 AT5G12840 103 / 1e-25 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4) Potri.006G053500 [exp] 124 / 5e-34 AT1G30500 123 / 3e-34 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Potri.006G145100 [exp] 118 / 4e-31 AT1G72830 168 / 3e-49 "nuclear factor Y, subunit A3", nuclear factor Y, subunit A3 (.1.2.3) Potri.018G064700 [exp] 111 / 8e-29 AT1G72830 172 / 5e-51 "nuclear factor Y, subunit A3", nuclear factor Y, subunit A3 (.1.2.3) Potri.016G068200 [exp] 107 / 2e-27 AT5G06510 194 / 2e-60 "nuclear factor Y, subunit A10", nuclear factor Y, subunit A10 (.1.2.3) Potri.006G201900 [exp] 106 / 7e-27 AT5G06510 166 / 3e-49 "nuclear factor Y, subunit A10", nuclear factor Y, subunit A10 (.1.2.3) Potri.001G257600 [exp] 100 / 1e-24 AT5G12840 216 / 1e-68 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02045 [flax] [poplar] CBFB_NFYA CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
Representative CDS sequence Show only first row Show all	>Lus10038448 pacid=23158210 polypeptide=Lus10038448 locus=Lus10038448.g ID=Lus10038448.BGIv1.0 annot-version=v1.0 ATGCTTTCTGCTGCTGCTTCGGCTGTATTTTCGTTTGAGGAGGACGGTGGATTCGATTTTGGGTCTCTGTTAATTTTATTTGGACTTCATTTCGTTGTGC TGTACAGACCTCCAGGTTGGCCATCTTGTTTCCGTGAGAGCCTCATGGATTCCTCCGTGCATGATCTTTCTGAGAACAACAAAGGTCAAGATGAGCAACA GAAAACCCCGGAACATAAGATTCAGTCTCCATTTCCAGCAGCAACCATGGCACATTCTGCTGTTGCAACTGGGAATATACCTTTCTCAACAGCTCCACTG CTTGGGGCAGGACAAGTACCCCAAGGTTACCCTTATCCAGATCCTTACTATAGAAGCATATTTCCTCCCTACGACTCCCAGCAGTATGCACCTCAGCCCT ACGGTGGGCAGCCTATGGTCCATGTTCAACTGATGGGGCTACAGCAGGGTGGCCTGCCATTGCCATCAGATGCAGTTGAAGAACCTGTCTTTGTTAATGC AAAGCAATACCATGGCATATTGAGACGTCGACAATCACGCGCAAAAGCTGAATCGGAAAACAAAGCTATCAAGTCCAGAAAGCCATACTTGCACGAGTCT CGGCACATCCATGCGCTGAAAAGAGCAAGAGGATGCGGAGGGAGGTTCCTGAACTCGAAGAAGAACGAGGACAAGCAAGATGCAAACAGCAACACCGCAT CGGGGGACAAATCGGAATCGAATATCAACTTGAACTCCGATAGAAGTGACACTGCTACCTCCAAAGGCAAAACTTAA
AA sequence Show only first row Show all	>Lus10038448 pacid=23158210 polypeptide=Lus10038448 locus=Lus10038448.g ID=Lus10038448.BGIv1.0 annot-version=v1.0 MLSAAASAVFSFEEDGGFDFGSLLILFGLHFVVLYRPPGWPSCFRESLMDSSVHDLSENNKGQDEQQKTPEHKIQSPFPAATMAHSAVATGNIPFSTAPL LGAGQVPQGYPYPDPYYRSIFPPYDSQQYAPQPYGGQPMVHVQLMGLQQGGLPLPSDAVEEPVFVNAKQYHGILRRRQSRAKAESENKAIKSRKPYLHES RHIHALKRARGCGGRFLNSKKNEDKQDANSNTASGDKSESNINLNSDRSDTATSKGKT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30500	CCAAT	NF-YA7	"nuclear factor Y, subunit A7"...		Lus10038448 [exp]	0	1
AT3G62140			unknown protein		Lus10038035 [exp]	11.4	0.8456
AT5G41210		GSTU12, GST10, ...	glutathione S-transferase THET...		Lus10008308 [exp]	19.4	0.7347
AT1G17330			Metal-dependent phosphohydrola...		Lus10040985 [exp]	20.0	0.8243
AT1G15030			Protein of unknown function (D...		Lus10033747 [exp]	21.6	0.8160
AT2G21150		XCT	XAP5 CIRCADIAN TIMEKEEPER, XAP...		Lus10007576 [exp]	21.8	0.8224
AT5G22620			phosphoglycerate/bisphosphogly...		Lus10009404 [exp]	35.2	0.7837
AT1G72050	C2H2ZnF	TFIIIA	transcription factor IIIA (.1....		Lus10015657 [exp]	65.7	0.7783
AT5G23250			Succinyl-CoA ligase, alpha sub...		Lus10028767 [exp]	71.2	0.7630
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10038817 [exp]	84.8	0.7404
AT4G36290		CRT1	compromised recognition of TCV...		Lus10014276 [exp]	86.7	0.7588

Compare expression of checked genes

Lus10038448 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.