Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34710 1266 / 0 HD ATHB14, PHB-1D, ATHB-14, PHB PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) AT1G30490 1234 / 0 HD ATHB9, PHV PHAVOLUTA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) AT5G60690 1076 / 0 HD IFL1, REV REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) AT1G52150 1066 / 0 HD ATHB15, ICU4, CNA, ATHB-15 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) AT4G32880 1045 / 0 HD ATHB8, ATHB-8 homeobox gene 8 (.1) AT4G04890 75 / 1e-13 HD PDF2 protodermal factor 2 (.1) AT3G61150 66 / 9e-11 HD HD-GL2-1, HDG1 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) AT4G21750 66 / 1e-10 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT1G05230 65 / 2e-10 HD HDG2 homeodomain GLABROUS 2 (.1.2.3.4) AT3G03260 64 / 2e-10 HD HDG8 homeodomain GLABROUS 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023357 [exp] 1603 / 0 AT2G34710 1316 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10000719 [exp] 1106 / 0 AT5G60690 1409 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10021470 [exp] 1093 / 0 AT5G60690 1419 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10037568 [exp] 1067 / 0 AT1G52150 1441 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Lus10011616 [exp] 1009 / 0 AT4G32880 1293 / 0.0 homeobox gene 8 (.1) Lus10011426 [exp] 985 / 0 AT4G32880 1338 / 0.0 homeobox gene 8 (.1) Lus10002037 [exp] 776 / 0 AT1G52150 1049 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Lus10020059 [exp] 108 / 6e-24 AT4G21750 1130 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10037554 [exp] 88 / 2e-17 AT1G79840 846 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G372300 [exp] 1397 / 0 AT2G34710 1358 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.011G098300 [exp] 1385 / 0 AT2G34710 1350 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.009G014500 [exp] 1095 / 0 AT5G60690 1382 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.001G188800 [exp] 1093 / 0 AT1G52150 1476 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Potri.003G050100 [exp] 1088 / 0 AT1G52150 1488 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Potri.004G211300 [exp] 1080 / 0 AT5G60690 1375 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.006G237500 [exp] 1077 / 0 AT4G32880 1412 / 0.0 homeobox gene 8 (.1) Potri.018G045100 [exp] 1075 / 0 AT4G32880 1400 / 0.0 homeobox gene 8 (.1) Potri.003G052400 [exp] 86 / 8e-17 AT1G79840 948 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) Potri.004G020400 [exp] 74 / 4e-13 AT4G04890 1185 / 0.0 protodermal factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0183 [flax] [poplar] PAS_Fold PF08670 [flax] [poplar] MEKHLA MEKHLA domain CL0209 [flax] [poplar] Bet_v_1_like PF01852 [flax] [poplar] START START domain CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10038449 pacid=23158304 polypeptide=Lus10038449 locus=Lus10038449.g ID=Lus10038449.BGIv1.0 annot-version=v1.0 ATGGCTTTGTCAATGTACCACAACAATAATAACACCAATCAGCTGAATAACGAGGGAGGATTGATGCTGCTGAATAAGAATCATCATCATAACCAGCAGC AGCAGCAGCAGATGGATACTAGCAAGTACGTGAGGTACACACCGGAGCAAGTTGAAGCATTGGAGAGGGTTTATGCTGAATGCCCTAAACCCACTTCCTT GAAGAGGCAGCAGCTCATCCGGGAGTGCCCTATCCTCTCCAACATTGAGCCCAAGCAGATAAAAGTCTGGTTTCAGAACCGCAGATGTCGTGAAAAGCAA AGAAAGGAAGCGTCCCGTCTACAGACGGTTAACAGGAAGCTGACCGCTATGAATAAGCTGCTGATGGAAGAGAATGACCGCTTGCAGAAGCAGGTCTCTC ACTTGGTGTATGACAATGGTTTCATGCGCCAACAGCTTCACAGTGGTTCTGCAACGGCCACGGACAATAGCTGTGAGTCTGTGGTCATGAGTGGTCAGCA GCAACAACAGCAGCAAAACCCATCAAGTCAGCATTCTCAAAGGGATGCTAACAACCCAGCTGGTCTACTCGCTATTGCTGAGGAGACCCTCGCGGAGTTC CTGTCCAAAGCGACTGGGACTGCTGTCGACTGGGTACAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGCATCGTCGCTGTCTCCCGCAACAGTA GTGGAGTAGCAGCACGAGCCTGTGGCCTCGTGAGTCTAGAACCCATGAAGGTTGCTGAAATCCTCAAAGAACGTACTTCTTGGTATCGTGATTGCCGATT TGTGGAAATGGCGAGTGTGATTCCTACTGGAAATGGTGGCACAATTGAGCTCATATATATGCAGACTTTTGCGCCTACTACATTAGCTGCGGCAAGAGAT TTTTGGACTATCCGATACACCACTACCTTGGAAGATGGCAGTCTTGTGATTTGCGAGAGGTCCTTGACCTCCTCTACTGGGGGTCCACCAGGGCCACCTT CTTCAGGCTTTGTTAGGGCCAAGATGCTTCCTAGTGGGTACCTTATTCGACCTTGTGATGGTGGTGGCTCCATCATTCACATTGTCGATCATGTTGATTT GGATCCTTCCAGTGTGCCTGAAGTTCTGAGGCCCCTCTATGAATCTTCCAAAATTATTGCTCAGAAAATGACCCTTGCTGCTTTAAGGCACATTAGGCAA ATTGCTCAAGAGAGCAGTGGAGAAATTCAGTATGGTGGAGGTCGCCAACCTGCTGTACTCAGGACATTCAGTCAGAGGCTCTGTAGGGGCTTCAATGATG CTGTCAACGGATTTGCAGACGATGGATGGTCCCTCCTGAGCGGAGATGGTGTTGACGATGTTACCATTGCCATAAACTCGTCTCCAAACAAAGTGCCCGG GTCTCAGTATAATGGGATGTTCCCCACTTTTGGAGGGGGGGTTCTCTGTGCGAGGGCATCGATGCTGGTTCAGAATGTGCCTCCCGCTTTGCTTGTTCGT TTTCTGAGGGAACATCGTTCCGAATGGGCTGATTGTGCTGTTGATGCTTATTCTGCTGCATGCCTCAAGTCTAGTCCTTATGCTGTCCCCTGTGGCCGAC CTGGTGGTTTCCCTAGTAGCCAAGTTATCTTACCTCTGGCTCATACTGTGGAGCATGAAGAGTTCTTGGAAGTAGTCCGTTTGGAAGCTCAGGCTTTCTC GCCTGATGAGATGGCTCTTGCTCGGGATATGTATCTTTTGCAGCTTTGCAGTGGAGTTGATGAAAATGCCTTTGGTGCATGTGCTCAACTTGTGTTCGCC CCTATTGACGAATCATTTGCTGATGATGCCCCTCTCCTTCCATCTGGCTTTCGTGTCATTCCACTGGATAGTAAAGCGGATGGGCATGGCGCAACTCGTA CTCTAGATTTGGCCTCGACTCTTGAAGTTGGCGCTGGGGGTGGTACACGTGCTGCAGCTCAATCTGACTCGAATGGTCACAATCTCAGATCGGTCCTGAC AATTGCATTCCAGTTTAGTTTCGAGAATCATTTGCGAGACAATGTGGCAGCTATGGCCAGGCAATATGTTCGTAGTGTTGTTGCCTCTGTCCAGAGAGTT GCAACTGCCATTGCTCCCTCTAGGATTGGCGCTCAAGTTGGTGGCGGTAAATCTCTCCCTGGCACCCCCGAGGCTCAAACTTTGGCACGCTGGATATATT GCAGTTTCAGAGCTCATACTGGTCGAGATCTTTTCAATGGCGATCCTGAAAGCGGGGATGCTTTGTTGAAACAACTTTGGCACAACTCTGATTCAATCAT GTGCTGCTCCTTGAAAACCAATGCATCTCCAGTGTTCACCTTTGCAAACCAAGCTGGACTGGACATGCTGGAAACCACTCTCGTGGCGCTTCAGGATATA ATGCTGGACAAGATTTTGGATGAAGCTGGACGGAAGATTTTGTTCTCGGAGTTCTCGAAGATCATGCATCAGGGGTATGCATACCTGCCGTCCGGTGTCT GCGTATCAAGCATGGGACGAACTGTGTCGTACGATCAGGCGATAGCATGGAAAGTAGTGAATGACGACGGCTCCAACCACTGCCTAGCTTTCATGTTCGT GAACTGGTCCTTCATGTGA
AA sequence Show only first row Show all	>Lus10038449 pacid=23158304 polypeptide=Lus10038449 locus=Lus10038449.g ID=Lus10038449.BGIv1.0 annot-version=v1.0 MALSMYHNNNNTNQLNNEGGLMLLNKNHHHNQQQQQQMDTSKYVRYTPEQVEALERVYAECPKPTSLKRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ RKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSHLVYDNGFMRQQLHSGSATATDNSCESVVMSGQQQQQQQNPSSQHSQRDANNPAGLLAIAEETLAEF LSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNSSGVAARACGLVSLEPMKVAEILKERTSWYRDCRFVEMASVIPTGNGGTIELIYMQTFAPTTLAAARD FWTIRYTTTLEDGSLVICERSLTSSTGGPPGPPSSGFVRAKMLPSGYLIRPCDGGGSIIHIVDHVDLDPSSVPEVLRPLYESSKIIAQKMTLAALRHIRQ IAQESSGEIQYGGGRQPAVLRTFSQRLCRGFNDAVNGFADDGWSLLSGDGVDDVTIAINSSPNKVPGSQYNGMFPTFGGGVLCARASMLVQNVPPALLVR FLREHRSEWADCAVDAYSAACLKSSPYAVPCGRPGGFPSSQVILPLAHTVEHEEFLEVVRLEAQAFSPDEMALARDMYLLQLCSGVDENAFGACAQLVFA PIDESFADDAPLLPSGFRVIPLDSKADGHGATRTLDLASTLEVGAGGGTRAAAQSDSNGHNLRSVLTIAFQFSFENHLRDNVAAMARQYVRSVVASVQRV ATAIAPSRIGAQVGGGKSLPGTPEAQTLARWIYCSFRAHTGRDLFNGDPESGDALLKQLWHNSDSIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDI MLDKILDEAGRKILFSEFSKIMHQGYAYLPSGVCVSSMGRTVSYDQAIAWKVVNDDGSNHCLAFMFVNWSFM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Lus10038449 [exp]	0	1
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Lus10023357 [exp]	1.0	0.9522
AT1G16520			unknown protein		Lus10031193 [exp]	1.7	0.8656
AT2G46980			unknown protein		Lus10009259 [exp]	2.8	0.8640
AT2G45340			Leucine-rich repeat protein ki...		Lus10030279 [exp]	2.8	0.8809
AT1G75640			Leucine-rich receptor-like pro...		Lus10033926 [exp]	4.7	0.8478
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10011149 [exp]	6.5	0.8528
AT1G69420			DHHC-type zinc finger family p...		Lus10036798 [exp]	6.7	0.8601
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10037720 [exp]	7.3	0.7917
AT2G40980			Protein kinase superfamily pro...		Lus10015685 [exp]	7.7	0.8504
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10036016 [exp]	7.9	0.7865

Compare expression of checked genes

Lus10038449 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.